PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21841_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 62aa    MW: 7504.48 Da    PI: 7.6585
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21841_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-081445132
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                                +g W +eEd++l  +v+++G  +W+  ++  g
  Cotton_A_21841_BGI-A2_v1.0 14 KGEWNAEEDDKLRTYVQKYGHWNWHQLPKFAG 45
                                799*****************99**99888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-8843IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-11843IPR009057Homeodomain-like
PROSITE profilePS500906.388942IPR017877Myb-like domain
PfamPF002495.1E-61444IPR001005SANT/Myb domain
CDDcd001671.68E-41646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MVRATFYDNN GMKKGEWNAE EDDKLRTYVQ KYGHWNWHQL PKFAGYFYSL SYYIGLILGI  60
EF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617906.12e-21PREDICTED: myb-related protein Myb4-like
TrEMBLA0A2P5SK221e-19A0A2P5SK22_GOSBA; Uncharacterized protein
STRINGGorai.013G071600.14e-19(Gossypium raimondii)
STRINGGorai.013G072900.14e-19(Gossypium raimondii)
STRINGEOX992639e-19(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2280633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.12e-13myb domain protein 92