PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21321_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 417aa MW: 47090.1 Da PI: 6.4642 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 63.1 | 5.3e-20 | 171 | 223 | 1 | 54 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kprl W++eLH++F+ a++ L G +A Pk+il +m+ + Lt +v+SHLQk++ Cotton_A_21321_BGI-A2_v1.0 171 KPRLLWNEELHQKFIAAITAL-GYANARPKSILTMMDEPNLTQRQVASHLQKHK 223 79*******************.99****************************87 PP | |||||||
2 | Response_reg | 45.1 | 5.4e-16 | 15 | 120 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 vl+vd + + ++ll+++l+ y +v++++ + al l++e + + l++ D++m +++ l +l+++ + + +p i+++ ++ Cotton_A_21321_BGI-A2_v1.0 15 VLVVDHDTTSLMLLASMLQLFSY-QVTTTEVESVALSLIEEAKdrFKLVMADVNMDDVNSLSFLRKLLKMN--IPFILMSNEK 94 89*********************.***************888778**********************9865..********** PP THHHHHHHHHTTESEEEESS--HHHH CS Response_reg 82 eeedalealkaGakdflsKpfdpeel 107 + a++a+ +Ga+ +l+Kp+++ +l Cotton_A_21321_BGI-A2_v1.0 95 GHKAAEKAVTYGASLHLEKPISKHDL 120 *********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.55E-21 | 11 | 170 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.1E-21 | 12 | 147 | No hit | No description |
SMART | SM00448 | 1.9E-8 | 13 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 26.826 | 14 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.9E-13 | 15 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.30E-14 | 16 | 121 | No hit | No description |
PROSITE profile | PS51294 | 9.31 | 168 | 227 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 169 | 228 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.02E-14 | 169 | 228 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-17 | 171 | 224 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MEEKRRSNCG EGFSVLVVDH DTTSLMLLAS MLQLFSYQVT TTEVESVALS LIEEAKDRFK 60 LVMADVNMDD VNSLSFLRKL LKMNIPFILM SNEKGHKAAE KAVTYGASLH LEKPISKHDL 120 KYLWQYAYGR PAKRAKHLHD NELRTYDPNK NVGERDEQKK MLNIMPPTER KPRLLWNEEL 180 HQKFIAAITA LGYANARPKS ILTMMDEPNL TQRQVASHLQ KHKEHMKRLM SKASPSELAS 240 NANASTSIYG KPGFLYMPQG YYSVLSQLGG HTHKYLNDSV AGTSQFSYLA QHSTAGRFSS 300 DYHNEETLQF PNILESMHEK QNIIPDPSPS GNLVYENHNW EPWTEAARRM AEAEIGVGNA 360 AGGVTWNQQS PELAQLLKHL EEEGDACGDC ANQPNPDAVD QFCEWLKEAI QGNDNNP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX581880 | 1e-135 | JX581880.1 Gossypium hirsutum clone NBRI_GE14608 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635925.1 | 0.0 | PREDICTED: two-component response regulator ARR14-like | ||||
TrEMBL | A0A1U8KTZ0 | 0.0 | A0A1U8KTZ0_GOSHI; two-component response regulator ARR14-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20051 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01760.1 | 2e-40 | response regulator 14 |