PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21202_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 590aa MW: 66831.8 Da PI: 8.9134

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21202_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	35.2	2.5e-11	133	158	1	26
---SS-EEEEEEE--TT-SS-EEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYr 26 ldDgy+WrKYGqK+vk+s +pr+ ++ Cotton_A_21202_BGI-A2_v1.0 133 LDDGYKWRKYGQKVVKNSLHPRAKHK 158 59********************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-12	118	159	IPR003657	WRKY domain
SuperFamily	SSF118290	1.26E-9	125	157	IPR003657	WRKY domain
PROSITE profile	PS50811	13.586	128	173	IPR003657	WRKY domain
SMART	SM00774	1.8E-5	133	175	IPR003657	WRKY domain
Pfam	PF03106	2.4E-7	134	159	IPR003657	WRKY domain
Pfam	PF03901	8.0E-11	198	410	IPR005599	GPI mannosyltransferase
Pfam	PF03901	6.3E-15	411	540	IPR005599	GPI mannosyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006487	Biological Process	protein N-linked glycosylation
GO:0030433	Biological Process	ER-associated ubiquitin-dependent protein catabolic process
GO:0000009	Molecular Function	alpha-1,6-mannosyltransferase activity
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MEGERGVPNY MLQVSFSSST PPPQAIHETG FLQFEENQVM SFLSPSQPLT TSPVSNTTNS 60 TTALRFITHN DQVGTLDSIP KAVHDENCGS NAKDGNNNSW WRSSALEKNK VKVRRKLREP 120 RFCFQTRSDV DVLDDGYKWR KYGQKVVKNS LHPRAKHKVV FELLGAEAII AECATMASKF 180 LQLYGYDLLL GSIAAFYVFM VPYTKVEESF NIQAMHDILY HRHHLDNYDH LEFPGVVPRT 240 FIGAFLASIF SSPIVLAVQL LHLPKIYSLI IVRLALGCII LSTLSFLRIQ VRNKFGHQVE 300 AFFVIFTAIQ FHLLFYCSRA LPNILAMGVG DSFLQSNFYI LTYAITTNAL TFHPYGLLEL 360 LDSFAMLNLA YGHWLKGNFY TALNYLVFAT TIFRCDIVLL LCPLGLEFLL THSIQWYFTS 420 ALPRSLLAAY PLFMLGVLLD RRLLPLVLPA LSFVVLYSKL PHKELRFIIS SVPIFNLSAA 480 VAASRIYNNR KKSFWKFLNL IMLGLLLISL GCTIITFMAS YENYPSGHAL KELHQIGHLA 540 NKSNELWVHI DPFSAMNGIS RFCENEWPWS CGNCGHQKGP SIKCHLSKAQ

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MEGERGVPNY MLQVSFSSST PPPQAIHETG FLQFEENQVM SFLSPSQPLT TSPVSNTTNS  60
TTALRFITHN DQVGTLDSIP KAVHDENCGS NAKDGNNNSW WRSSALEKNK VKVRRKLREP  120
RFCFQTRSDV DVLDDGYKWR KYGQKVVKNS LHPRAKHKVV FELLGAEAII AECATMASKF  180
LQLYGYDLLL GSIAAFYVFM VPYTKVEESF NIQAMHDILY HRHHLDNYDH LEFPGVVPRT  240
FIGAFLASIF SSPIVLAVQL LHLPKIYSLI IVRLALGCII LSTLSFLRIQ VRNKFGHQVE  300
AFFVIFTAIQ FHLLFYCSRA LPNILAMGVG DSFLQSNFYI LTYAITTNAL TFHPYGLLEL  360
LDSFAMLNLA YGHWLKGNFY TALNYLVFAT TIFRCDIVLL LCPLGLEFLL THSIQWYFTS  420
ALPRSLLAAY PLFMLGVLLD RRLLPLVLPA LSFVVLYSKL PHKELRFIIS SVPIFNLSAA  480
VAASRIYNNR KKSFWKFLNL IMLGLLLISL GCTIITFMAS YENYPSGHAL KELHQIGHLA  540
NKSNELWVHI DPFSAMNGIS RFCENEWPWS CGNCGHQKGP SIKCHLSKAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	KVRRKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Required for N-linked oligosaccharide assembly. Adds the eighth mannose residue in an alpha-1,6 linkage onto the dolichol-PP-oligosaccharide precursor dolichol-PP-Man(7)GlcNAc(2). {ECO:0000269\|PubMed:20023196}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669808	0.0	KF669808.1 Gossypium hirsutum WRKY transcription factor 25 (WRKY25) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016682005.1	0.0	PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like isoform X2
Swissprot	A8MR93	1e-165	ALG12_ARATH; Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
TrEMBL	A0A1U8IV88	0.0	A0A1U8IV88_GOSHI; Mannosyltransferase
STRING	Gorai.004G166900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9677	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	3e-31	WRKY family protein

Publications ? help Back to Top
Hong Z, et al. Mutations of an alpha1,6 mannosyltransferase inhibit endoplasmic reticulum-associated degradation of defective brassinosteroid receptors in Arabidopsis. Plant Cell, 2009. 21(12): p. 3792-802 [PMID:20023196] Hong Z, et al. Evolutionarily conserved glycan signal to degrade aberrant brassinosteroid receptors in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(28): p. 11437-42 [PMID:22733738] Baer J,Taylor I,Walker JC Disrupting ER-associated protein degradation suppresses the abscission defect of a weak hae hsl2 mutant in Arabidopsis. J. Exp. Bot., 2016. 67(18): p. 5473-5484 [PMID:27566817]