PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21181_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 309aa    MW: 34937.3 Da    PI: 4.745
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21181_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-131357145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                +g+W +eEde l++ vk++G++ W++I ++  + Rt+k+c++rw+
  Cotton_A_21181_BGI-A2_v1.0 13 KGPWKAEEDEVLINHVKKYGPREWSSIRSKGLLQRTGKSCRLRWF 57
                                79*************************8887799**********7 PP
2Myb_DNA-binding43.57.3e-145795444
                                S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
             Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                                +T+eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
  Cotton_A_21181_BGI-A2_v1.0 57 FTAEEERVVIELQAQFGNK-WAKIATYLP-GRTDNDVKNFW 95
                                7******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-18957IPR009057Homeodomain-like
SuperFamilySSF466896.74E-251195IPR009057Homeodomain-like
SMARTSM007170.0141256IPR001005SANT/Myb domain
CDDcd001671.29E-101558No hitNo description
PfamPF139215.7E-81656No hitNo description
PROSITE profilePS5129419.13649103IPR017930Myb domain
CDDcd001673.88E-115795No hitNo description
SMARTSM007179.3E-957101IPR001005SANT/Myb domain
PfamPF002496.5E-125795IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-175897IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGKRVEISQ IRKGPWKAEE DEVLINHVKK YGPREWSSIR SKGLLQRTGK SCRLRWFTAE  60
EERVVIELQA QFGNKWAKIA TYLPGRTDND VKNFWSSRQK RLARILQNSG TPSSSSSSSS  120
SKSLKLKREI PAFHDVPVFE ASKLSSSMEE ISYTMAQSCS SSSYLDNTEA IIKLEQSPEL  180
VNPKLYTDAN MAQLELMSIG NNPYAATEAQ PQAFFPQIPH PQPYLTLSLE SQDLLAKFED  240
PYFSQVFAPM DVPELDSGNV EQQPFLEPVR SGGFGAREEA DNPMIPDTFF DDFPADMFDQ  300
MELFPNPST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261010124126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5884502e-93JX588450.1 Gossypium hirsutum clone NBRI_GE22878 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716637.10.0PREDICTED: myb-related protein 340-like
RefseqXP_017625645.10.0PREDICTED: myb-related protein 340
TrEMBLA0A1U8LPZ50.0A0A1U8LPZ5_GOSHI; myb-related protein 340-like
STRINGGorai.004G165400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65512842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-72MYB family protein