PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21124_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 682aa    MW: 75328.7 Da    PI: 8.1131
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21124_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-07256276526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C+ f++ G Ck Gd+C +aHg
  Cotton_A_21124_BGI-A2_v1.0 256 PCPEFRK-GSCKQGDNCEYAHG 276
                                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.5E-1630176IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.2E-1436158IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.59260169IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00676090IPR002110Ankyrin repeat
CDDcd002042.56E-1362158No hitNo description
PfamPF127966.4E-765160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001995127IPR002110Ankyrin repeat
PROSITE profilePS5008811.62195130IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.107.2E-5248277IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5251277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319251278IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4256276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4283315IPR000571Zinc finger, CCCH-type
SMARTSM003563.9286309IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.409286310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MKGVSHKVDK VPLKFSFLLE LSASNDLIGF RNAIEREGRD IDERSLWYGR RMGSRKMGIE  60
QRTPLLIASL FGSKDVVKYI LKSGRVDVNR ACGSDGATAL HCVVAGGSLN SSEVIKTLLD  120
ASANINALDA NGNRPRDLIA MACNSAFNSR KKILESLLKG SGSDDEIERL PVHLEACDSM  180
PWVLKDETEK KEYPIDVTLP DIKNEMYGTD EFRMYNFKVT PCSRAYSHDW TGCPFVHPGE  240
NARRRDPRKH QYSCVPCPEF RKGSCKQGDN CEYAHGIFES WLHPAQYRTR LCKDESNCNR  300
KVCFFAHKPE ELRPVYASTG SAVPSPRSYS ATGPALDMGS MSPHALGSPS ILMPPTSTPP  360
LTPTSTSSPM AGVMWPNQSN IVPTLQLNRS RLKTARCAQN LDLDVEQLGL ESNCRRQKQQ  420
LIDEIPGLSS PTRWNNPLST TSVFSAFANR TGELNRFGAI KPTNLEDTFG SLNPNILPQL  480
QGTSLDAPTH QLQSPTGVRM RQNNNEQLHA NYPTNLPSPP VRASQSFGSD PSRPTTTAVL  540
SSRPAAFANR SQSFIKDTSI NHHSGFSSST SSASAMPCNF SDWGSPDGKL DWGIQGDNKQ  600
RKSSLVFRNN GSNFGNPVES MSPTSDEPDV SWIQSLVKDT PSKQISFEDE QQQEQRHLNI  660
GGSALFPARV EKLCLEHEKM VT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609634.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2P5XBU10.0A0A2P5XBU1_GOSBA; Uncharacterized protein
STRINGGorai.006G106300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein