PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_20980_BGI-A2_v1.0

Common Name

F383_30587

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 185aa MW: 19960.5 Da PI: 8.7073

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_20980_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8e-05	78	117	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R ++i ++++ L++l+ + +K + a++L +A+ YI+ L Cotton_A_20980_BGI-A2_v1.0 78 KVRKEKIGDRINALQQLVSPF-----GKTDTASVLHEAMGYIRFL 117 568899***********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.87E-6	59	122	No hit	No description
PROSITE profile	PS50888	10.791	68	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-11	77	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-8	78	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MLCFGGCHPN DAEIVLGKPA IHAAPKAGLT CSDSSSTSSG NNTKSMQCRG AIVEAQPTRR 60 RTNKRSKVEN PTTGGHAKVR KEKIGDRINA LQQLVSPFGK TDTASVLHEA MGYIRFLHDQ 120 VQVLCSPYLQ HPHDGENNGG EESRKELKSR GLCLVPVACT AHVENSNGAD FWSPATMGNN 180 VIIRQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	65	RRTNKRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017644909.1	1e-138	PREDICTED: transcription factor bHLH113-like isoform X1
Swissprot	Q9LT67	8e-54	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A0B0PBM9	1e-136	A0A0B0PBM9_GOSAR; Transcription factor protein
TrEMBL	A0A2P5W3M5	1e-136	A0A2P5W3M5_GOSBA; Uncharacterized protein
STRING	Gorai.013G048000.1	1e-136	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	8e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]