PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20830_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 363aa    MW: 40317.1 Da    PI: 5.8727
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20830_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.23.1e-15199235135
                        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C++Cg  +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Cotton_A_20830_BGI-A2_v1.0 199 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANKGT 235
                                 **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062036.3E-15133175IPR010402CCT domain
PROSITE profilePS5101712.818133175IPR010402CCT domain
SMARTSM004014.1E-9193246IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-11197247No hitNo description
Gene3DG3DSA:3.30.50.103.0E-14197239IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.90E-14198245No hitNo description
PfamPF003206.8E-13199235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDTVNQRGLL GRPYGYLHDD GGFERKDIKG AHKAVMNGVM SSVQPTRTSE LTIAFEGEVY  60
VFPAVTSEKN FHTIGGFMAF KFAIPLVAGW VQAVLLLLGG CDTSINVPSS EFLLQEKVKV  120
VGDSSRGSKI SRRIASLVRF REKRKERCFE KKIRYTCRKE VAQRMHRKNG QFASVKDSNS  180
GEGSCDQSDD TPDSVLRSCQ HCGINEKLTP AMRRGPAGPR TLCNACGLMW ANKGTLRDLR  240
KGGRSTHFDS KELETPTDIK PSTLEPENSF ANNDEQGSPQ EKKPVPMDSE NHLITSNEQE  300
FAQNSHPFLI RVENSSVNLD NEDIQETLEE LADASGSDFE IPSHFDEQVD IDDTNIVTAW  360
PGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633519.10.0PREDICTED: GATA transcription factor 19-like isoform X1
SwissprotB8AR306e-52GAT19_ORYSI; GATA transcription factor 19
TrEMBLA0A0B0PCD60.0A0A0B0PCD6_GOSAR; GATA transcription factor 24-like protein
STRINGGorai.005G226000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.19e-44ZIM-like 1