PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_20510_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 166aa MW: 18394.6 Da PI: 8.6065

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_20510_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	188.4	3.5e-58	6	140	23	170
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsene 105 vsvP +s f++vtvrCGhC++llsvn+ ++ q++++++ ++++ +e++ ++ ++ s+ ++ s+ +++ Cotton_A_20510_BGI-A2_v1.0 6 TVSVPCNSAFNIVTVRCGHCANLLSVNMGTSLQTVPSQDA--------QKQQITIDEDHSNKECGSS-SKCNKFSA---VDST 76 69*********************************996........3333333333333222222.22222222...3567 PP YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e++r+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Cotton_A_20510_BGI-A2_v1.0 77 EQEATRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 140 788999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.7E-62	6	140	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-8	84	133	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.0E-5	88	134	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MADLKTVSVP CNSAFNIVTV RCGHCANLLS VNMGTSLQTV PSQDAQKQQI TIDEDHSNKE 60 CGSSSKCNKF SAVDSTEQEA TRMPPIRPPE KRQRVPSAYN RFIKEEIQRI KASNPDISHR 120 EAFSTAAKNW AHFPHIHFGL KLEGSKQAKL DQGYADQGSQ KSNGYC

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017640221.1	1e-118	PREDICTED: putative axial regulator YABBY 2 isoform X3
Swissprot	Q9XFB0	1e-64	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2P5XSM8	1e-121	A0A2P5XSM8_GOSBA; Uncharacterized protein
STRING	Gorai.001G127000.1	1e-117	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-67	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]