PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19865_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 755aa MW: 86177.2 Da PI: 6.4366

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19865_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.5e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevt 79 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt Cotton_A_19865_BGI-A2_v1.0 59 EFYCSFAKQCGFSIRRHRTRGKdGIGRGVTRRDFTCHRGGYPQMKLSEDGKMQRNRKSSRCGCRAYMRIVKRAdfnVPEWRVT 141 6*************999877456677****************9***************98887676789 PP FAR1 80 kleleHnHela 90 +++ HnHel Cotton_A_19865_BGI-A2_v1.0 142 AFSNIHNHELL 152 *******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.5E-19	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	538	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-7	558	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.4E-6	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MSEGTSMVME SSENGTDLSQ DDNGTIVEMP EDTILSQQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGIGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG 120 CRAYMRIVKR ADFNVPEWRV TAFSNIHNHE LLKANEVCLL PAYCTITPDD KARICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDNDPIDLIA MCKKLKDENP 240 NFQYDFKLDG HNRLEHIAWT YASSVQLYVS FGDAVIFDTT HRLDAYDMLL GVWVGVDNHG 300 MTTFFGCVLL RDENIQSFSW GLKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETKHAF 360 SICHIISKFS DWFSVLLGSR YDDWKSDFYR LYGLELLEEF EEEWREMIDK YGLHDNKHII 420 SLYALRTFWA LPFLRPYFFA GLTSLCQSET TTTFIQRILS AQSLLDRFVE QVAEVVEFND 480 RGSKQKQPRK SQKVCLKTGS PIESHAATVL TPYAFGKLQE ELLLAPQYAS FVVDEGCFEV 540 KHHTQMDGGC KVICVLCEEQ ISCSCHHFEF SGILCRHVLR VLSSNNCFHI PDPYLPSRWR 600 LNSSSSINPL SNATRQHSEK IQLLESLTSA LIAESIETKE RLDVACEQTA MVLSRIKDLP 660 RTTQSANDIV YNCPSDLILP EVEDTDGIVQ SFTMGTSHEP LTSGKLKDRR PRDGIDITRK 720 RRHYSDSCCG HFEHDSSDCP MMEGDNLNGD ALGYI

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MSEGTSMVME SSENGTDLSQ DDNGTIVEMP EDTILSQQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGIGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG  120
CRAYMRIVKR ADFNVPEWRV TAFSNIHNHE LLKANEVCLL PAYCTITPDD KARICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDNDPIDLIA MCKKLKDENP  240
NFQYDFKLDG HNRLEHIAWT YASSVQLYVS FGDAVIFDTT HRLDAYDMLL GVWVGVDNHG  300
MTTFFGCVLL RDENIQSFSW GLKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETKHAF  360
SICHIISKFS DWFSVLLGSR YDDWKSDFYR LYGLELLEEF EEEWREMIDK YGLHDNKHII  420
SLYALRTFWA LPFLRPYFFA GLTSLCQSET TTTFIQRILS AQSLLDRFVE QVAEVVEFND  480
RGSKQKQPRK SQKVCLKTGS PIESHAATVL TPYAFGKLQE ELLLAPQYAS FVVDEGCFEV  540
KHHTQMDGGC KVICVLCEEQ ISCSCHHFEF SGILCRHVLR VLSSNNCFHI PDPYLPSRWR  600
LNSSSSINPL SNATRQHSEK IQLLESLTSA LIAESIETKE RLDVACEQTA MVLSRIKDLP  660
RTTQSANDIV YNCPSDLILP EVEDTDGIVQ SFTMGTSHEP LTSGKLKDRR PRDGIDITRK  720
RRHYSDSCCG HFEHDSSDCP MMEGDNLNGD ALGYI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649066.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_017649067.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0D2RDZ8	0.0	A0A0D2RDZ8_GOSRA; Uncharacterized protein
STRING	Gorai.011G195800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]