PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19428_BGI-A2_v1.0
Common NameF383_11632
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 94aa    MW: 10453.8 Da    PI: 8.5247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19428_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.62e-0728612154
                                HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                         HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                ++Lr llP+ +  ++s K+s + +L+++++YI+sL
  Cotton_A_19428_BGI-A2_v1.0 28 SKLRHLLPEiR-DNRSDKVSASKVLQETCNYIRSL 61
                                79*******76.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.188761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-72777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-82780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-52861IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSRRSSSRQ SSGGVSRISD DQIIALVSKL RHLLPEIRDN RSDKVSASKV LQETCNYIRS  60
LHKEVEDLSD RLSQLLATID AESAEAAIIR SLLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642642.13e-59PREDICTED: transcription factor PRE6
SwissprotQ9LJX19e-38PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0B0PVM98e-58A0A0B0PVM9_GOSAR; Transcription factor protein
STRINGGorai.006G021800.13e-48(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-36bHLH family protein