PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19208_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 304aa    MW: 33522.8 Da    PI: 7.7079
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19208_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30156214259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +Dgy+WrKYGqK+ k+++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYeg+Hnh 
  Cotton_A_19208_BGI-A2_v1.0 156 RDGYQWRKYGQKVTKDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSFLVATYEGKHNHA 214
                                 7***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-29148216IPR003657WRKY domain
PROSITE profilePS5081127.014150216IPR003657WRKY domain
SuperFamilySSF1182901.31E-25152216IPR003657WRKY domain
SMARTSM007749.6E-34155215IPR003657WRKY domain
PfamPF031061.4E-24157213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGSSAWVDTT LDLNINPFHH RNKALRTESE GEMADSDVKL PFKQENAVLV EELNRIKAEN  60
KKLTEMLTVL GHCYNDLQNK FMELVTINSE NEVSTSKKRK AECEDYSPNM IGFSNGNTET  120
SCSDEDSCKM PRECIKTTIS RTYVRTNPSD NSLIVRDGYQ WRKYGQKVTK DNPSPRAYFK  180
CSFAPSCPVK KKVQRSAEDP SFLVATYEGK HNHAHPSPSE VAILSPKCSA KPVSCASTRP  240
SAPTATLELM QPGGYGDGAE KKTQEVDDAP AAIQQVLVQH MAASLTRNPN FTAALAAAIS  300
GRVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-211542171678Probable WRKY transcription factor 4
2lex_A1e-211542171678Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698320.0KF669832.1 Gossypium hirsutum WRKY transcription factor 11 (WRKY11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644113.10.0PREDICTED: WRKY transcription factor 18-like
TrEMBLA0A2P5X4I20.0A0A2P5X4I2_GOSBA; Uncharacterized protein
STRINGGorai.001G037700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.11e-80WRKY DNA-binding protein 18