PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18399_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 302aa    MW: 33330.3 Da    PI: 9.6333
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18399_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044207229123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++C+k F +  +Lk H r++
  Cotton_A_18399_BGI-A2_v1.0 207 HRCGKCKKAFGSYNTLKEHKRVC 229
                                 79******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.907431IPR007087Zinc finger, C2H2
PfamPF139121.2E-5427IPR007087Zinc finger, C2H2
SMARTSM003550.12426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.5E-6207261No hitNo description
PROSITE profilePS501578.974207228IPR007087Zinc finger, C2H2
PfamPF139120.038207227IPR007087Zinc finger, C2H2
SMARTSM0035520207227IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-11238261IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411239261IPR007087Zinc finger, C2H2
SMARTSM003550.35239261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEKHKCKLCA RTFSNGRALG GHMKGHLANH PLPPKTTHHQ LSNRTDSASS SSSSSGDDEQ  60
EKSRETLLED KSLVYGLREN PKKSFRFADP EFSFAGDSGS VVQDRESETE SRNPTRRRSK  120
RKPKVGTANA TTATDEIKKL KLLTSFPSLI DSPAEPEPLS SVSDTSPEEN VAVCLMLLSR  180
DVWKRNNVEQ RSGKPMESSK KKMNGKHRCG KCKKAFGSYN TLKEHKRVCL SSAADSKRFE  240
CPFCYRVFGS GQALGGHKRS HLLASASSSN TAANFTKFDN NFIDLNLPAP LEDDEFSVVS  300
DA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121RRRSKRK
2115140RRRSKRKPKVGTANATTATDEIKKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625386.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A2P5XXG00.0A0A2P5XXG0_GOSBA; Uncharacterized protein
STRINGGorai.004G198300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17350611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.15e-39C2H2-like zinc finger protein