PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18282_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 693aa MW: 80589.4 Da PI: 5.9002 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.3 | 1.9e-21 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk 80 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk + +++r r++ r+gC+ak+ ++ke ++w v + Cotton_A_18282_BGI-A2_v1.0 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKLSGEHHRDRKSVRCGCDAKMYLSKEVidgVSQWFVVQ 149 59********************8888.********************9**********************99867789***** PP FAR1 81 leleHnHela 90 +++ HnHel Cotton_A_18282_BGI-A2_v1.0 150 FSNVHNHELL 159 ********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-19 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-18 | 291 | 382 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.916 | 565 | 600 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.7E-8 | 572 | 599 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.2E-6 | 575 | 602 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MASVASKNMW LRRQQCPCGD WKCYVTYEGD AEETSIVSQI VKTESHQSQD MVAPYVGMVF 60 KTDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKLSGEHHRD 120 RKSVRCGCDA KMYLSKEVID GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKINEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLNEKREN 240 DTMELLEACK ATKEADQDFV YDFTVDQNDK VENIAWSYGV AVNSYALFGD VVYFDTTYRS 300 ITYDMLFGAW FGIDNNGQPI FFGCVLLQDE TLRSFAWAIQ TLIRFMKGRC PQTILSDLDP 360 RLRDAITSEL PSTKHVTSIW NILPKVSSWF SLQLGSQYAD FKSEFDALYR LESTEGFELR 420 WNQMVSIFGL GSDKHITLLY SLRTSWVLSY VRVHFLARMA TTAYSKSVDA FLKGIFGVQS 480 CLRGFFEQVG IAANLQNERH QEIQCQYMHM KTCLPIEEHS RQILTPFAFN SLQQELIVSM 540 QYAASEMANG SYVVRHFRKI DGESLVIWIP EDEQIHCSCK EFESSGILCR HALRVFIDKN 600 YFQLPEKYFL SRWRRESSLM FYDDHSVQDK DDEWFQEFQS LTETLFAESS ITKERSDYIR 660 RELTKELTRL LNEIRDMPEN DGAPMDFTLT PTD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017612224.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A1U8PRN8 | 0.0 | A0A1U8PRN8_GOSHI; Uncharacterized protein | ||||
STRING | Gorai.010G189600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1765 | 26 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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