PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18082_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 265aa    MW: 29269.5 Da    PI: 5.3269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18082_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161462148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                rg+W+++Ed+ l ++ +++G+g +W + +r+ g++R++k+c++rw++yl
  Cotton_A_18082_BGI-A2_v1.0 14 RGPWSPDEDDTLRNYLAKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62
                                89*********************************************97 PP
2Myb_DNA-binding36.79.9e-1269113246
                                 SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 
                                 g +T eEd ++  +    G++  W++Ia+ ++ gRt++++k++w++
  Cotton_A_18082_BGI-A2_v1.0  69 GGFTDEEDNIICSLYGSIGSRqVWSLIAAQLP-GRTDNDIKNHWNT 113
                                 569*****************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.709962IPR017930Myb domain
SuperFamilySSF466892.87E-2511111IPR009057Homeodomain-like
SMARTSM007171.7E-111364IPR001005SANT/Myb domain
PfamPF002495.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-241569IPR009057Homeodomain-like
CDDcd001677.52E-91662No hitNo description
PROSITE profilePS5129420.69963119IPR017930Myb domain
SMARTSM007173.0E-867117IPR001005SANT/Myb domain
PfamPF002493.4E-1069113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2170119IPR009057Homeodomain-like
CDDcd001679.30E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPD EDDTLRNYLA KHGTGGNWIA LPRKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTDEEDNIIC SLYGSIGSRQ VWSLIAAQLP GRTDNDIKNH WNTKLKKKLF  120
AAKSGVDQNS NNHELTITDS STTSVPIEAE ALVNGSTTTT TSSSYMINMK YQQNYDYPGL  180
VLDQIDQFTL PGLMEYSITS TASDNYSMSS SSQEVSILCN SSSFAPENNS TAWFIDGGAE  240
DQGILLDQLD FEGPHYLFTA SGQQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23141197108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645301.11e-177PREDICTED: transcription factor RAX2-like
SwissprotQ9FKL23e-70MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2P5VUY80.0A0A2P5VUY8_GOSBA; Uncharacterized protein
STRINGGorai.010G079900.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-72myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]