PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17987_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 405aa    MW: 45277 Da    PI: 6.8057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17987_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-19194244256
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Cotton_A_17987_BGI-A2_v1.0 194 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 244
                                 59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-33193253No hitNo description
Gene3DG3DSA:3.30.730.104.0E-32194252IPR001471AP2/ERF domain
PROSITE profilePS5103222.932194251IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23194252IPR016177DNA-binding domain
SMARTSM003802.7E-40194257IPR001471AP2/ERF domain
PfamPF008472.1E-12195244IPR001471AP2/ERF domain
PRINTSPR003677.8E-11195206IPR001471AP2/ERF domain
PRINTSPR003677.8E-11217233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MTQANNRGKS QKGVVDETEK MTTFQDGETE KGKYVDSGSE RRQWKPVFDE ASISQRPLKK  60
ICSPERHHPL PSSASLAHHS SSSSSSSSSS SLPSSRLVFP FAFDASQPPI FFPRQYGNTQ  120
QQQQQHGLIY RPLYAAETSL SPQQQQQQQQ LLQYWSDALN LSPRGRMMTT TTRLGQDGGQ  180
MFRPPLQHVH TTKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEDA ALAYDREAFK  240
LRGENARLNF PELFLNKDKD TSSPTPTSTV SPPQTPHESS KQEQGPKLVI NPTAAAQPQG  300
DNPDSDEMHI TAAEGSSGAG EGVSGSQELV WGDMAEAWFN TIPAGWGPAS PVWDDLDTTN  360
NLLFPSNLPF TNQIQQELND SDHQKQHDVS ASASSPMKPF FWKDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21193251160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323100.0EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632537.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2P5WW200.0A0A2P5WW20_GOSBA; Uncharacterized protein
STRINGGorai.005G202900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.18e-50ERF family protein