PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_17373_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 790aa MW: 85798.4 Da PI: 5.6535

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_17373_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.9	3.7e-30	89	173	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++qe+laL+++r++m+ ++r++ k+plWe+vs+k++e g++rs+k+C+ek+en++k+yk++ke++ +r++++s +++f+ Cotton_A_17373_BGI-A2_v1.0 89 RWPRQETLALLKIRSDMDATFRDATVKGPLWEDVSRKLAELGYKRSAKKCREKFENVHKYYKRTKETRAGRQDGKS--YKFFS 169 8*******************************************************************866665..* PP trihelix 84 qlea 87 qlea Cotton_A_17373_BGI-A2_v1.0 170 QLEA 173 85 PP
2	trihelix	109	3e-34	530	615	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+k evl+Li++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ Cotton_A_17373_BGI-A2_v1.0 530 RWPKAEVLTLINLRSGLESRYQEAGPKGPLWEEISAGMSRLGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFH 611 8*******************************************************************8.99999** PP trihelix 84 qlea 87 ql+a Cotton_A_17373_BGI-A2_v1.0 612 QLDA 615 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0048	86	148	IPR001005	SANT/Myb domain
Pfam	PF13837	7.5E-21	88	174	No hit	No description
CDD	cd12203	3.63E-28	88	153	No hit	No description
PROSITE profile	PS50090	6.667	88	146	IPR017877	Myb-like domain
SMART	SM00717	0.042	527	589	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-23	529	616	No hit	No description
PROSITE profile	PS50090	6.679	529	587	IPR017877	Myb-like domain
CDD	cd12203	1.49E-31	529	594	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MQQEGGGGGG GGQQSQYGEM TTGPPTTGAV SEASEQLVEA ASPISSRPPA GNLDEFMRLA 60 SVGGGDELGL GDRHGSGGGG GAGVASGNRW PRQETLALLK IRSDMDATFR DATVKGPLWE 120 DVSRKLAELG YKRSAKKCRE KFENVHKYYK RTKETRAGRQ DGKSYKFFSQ LEALQTTSGA 180 APANVSIPVI PATVAVTAAS LDVAPVSVGI PMPISSAARI VPPTTAVPMS SSSFLSMPGS 240 ALAPVPVAVP EPAMAPAPAP PAATTAAPFG ISFSSNSSTF SQGFDDDEED EDEVGVGGEP 300 SSMAGTSRKR KRSSSRGGSG STTRRMMEFF EGLMKQVMQK QETMQQRFLE AMEKREQDRT 360 IREEAWKRQE MARLSHEHEL MAQERAIAAS RDAAIVSFLQ KITGQTIQLP TTATVIVPAP 420 APPPPPPPTQ PTVSVVPPEV PIAPPSHQTP SLTQQKQQEQ QQTHISHHQP PPPQQQPQVV 480 QQQQQLHNME LVRHQQQPIT TEIVMAIPEQ QVPPQEISGS GSLVEPASSR WPKAEVLTLI 540 NLRSGLESRY QEAGPKGPLW EEISAGMSRL GYKRSAKRCK EKWENINKYF KKVKESNKKR 600 PEDAKTCPYF HQLDALYRKK ILGGGTSSGS FSDHNRPDEE TSRQHHDPTL STAAPQPSQN 660 ETGATADVVT SKEGLPSHPF GEGNGGAAKK PGSTVRELME EQREGLHHQQ HHHRGQSLLV 720 DGYGRIDEPD SDIMDQEVDE DDDEEDNDDD DDEELEEERK MGYKIEFQRQ NSNTPNGGGN 780 GAPSFFTMVQ

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MQQEGGGGGG GGQQSQYGEM TTGPPTTGAV SEASEQLVEA ASPISSRPPA GNLDEFMRLA  60
SVGGGDELGL GDRHGSGGGG GAGVASGNRW PRQETLALLK IRSDMDATFR DATVKGPLWE  120
DVSRKLAELG YKRSAKKCRE KFENVHKYYK RTKETRAGRQ DGKSYKFFSQ LEALQTTSGA  180
APANVSIPVI PATVAVTAAS LDVAPVSVGI PMPISSAARI VPPTTAVPMS SSSFLSMPGS  240
ALAPVPVAVP EPAMAPAPAP PAATTAAPFG ISFSSNSSTF SQGFDDDEED EDEVGVGGEP  300
SSMAGTSRKR KRSSSRGGSG STTRRMMEFF EGLMKQVMQK QETMQQRFLE AMEKREQDRT  360
IREEAWKRQE MARLSHEHEL MAQERAIAAS RDAAIVSFLQ KITGQTIQLP TTATVIVPAP  420
APPPPPPPTQ PTVSVVPPEV PIAPPSHQTP SLTQQKQQEQ QQTHISHHQP PPPQQQPQVV  480
QQQQQLHNME LVRHQQQPIT TEIVMAIPEQ QVPPQEISGS GSLVEPASSR WPKAEVLTLI  540
NLRSGLESRY QEAGPKGPLW EEISAGMSRL GYKRSAKRCK EKWENINKYF KKVKESNKKR  600
PEDAKTCPYF HQLDALYRKK ILGGGTSSGS FSDHNRPDEE TSRQHHDPTL STAAPQPSQN  660
ETGATADVVT SKEGLPSHPF GEGNGGAAKK PGSTVRELME EQREGLHHQQ HHHRGQSLLV  720
DGYGRIDEPD SDIMDQEVDE DDDEEDNDDD DDEELEEERK MGYKIEFQRQ NSNTPNGGGN  780
GAPSFFTMVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649368.1	0.0	PREDICTED: trihelix transcription factor GTL1 isoform X1
Swissprot	Q39117	1e-68	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A1U8LPL0	0.0	A0A1U8LPL0_GOSHI; trihelix transcription factor GTL1-like isoform X1
STRING	Gorai.008G262400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6226	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-56	GT-2-like 1