PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_17302_BGI-A2_v1.0

Common Name

F383_17141

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 28450 Da PI: 7.6942

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_17302_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.9e-19	106	160	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Le+ F+++ ++ ++++ LA+kl+L rqV vWFqNrRa+ k Cotton_A_17302_BGI-A2_v1.0 106 RKKLRLTKHQSAILEDSFKEHTTLCPKQKQALAAKLDLRPRQVEVWFQNRRARTK 160 78889************************************************98 PP
2	HD-ZIP_I/II	119.1	2.4e-38	106	194	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk+rl+k+q+++LE+sF+e+++L p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL++e Cotton_A_17302_BGI-A2_v1.0 106 RKKLRLTKHQSAILEDSFKEHTTLCPKQKQALAAKLDLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQEE 188 69******************************************************************************* PP HD-ZIP_I/II 84 veeLre 89 +eL++ Cotton_A_17302_BGI-A2_v1.0 189 LQELKS 194 **84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-18	101	163	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.131	102	162	IPR001356	Homeobox domain
SMART	SM00389	8.5E-16	104	166	IPR001356	Homeobox domain
CDD	cd00086	1.52E-16	106	163	No hit	No description
Pfam	PF00046	7.1E-17	106	160	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.8E-18	106	160	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	137	160	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.4E-9	162	194	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.8E-19	162	205	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGFDDICSSG LGLGLGWNVK QENFSQSDHQ QKKRKSLVRD EHFFPSLTLG PSSDDDARKA 60 HGDDQQASSV TALSSFSNSS VKKEGDVEFD RVSSRVGDED YEGCHRKKLR LTKHQSAILE 120 DSFKEHTTLC PKQKQALAAK LDLRPRQVEV WFQNRRARTK LKQTEVDCEL LKKCCETLTE 180 ENKRLQEELQ ELKSWKLTAS YCMQLPAAAT LTMCPSCERV ANGGDGLPAT TTSIPFTIGP 240 KSHFINSLSH PSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	162	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605851.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-71	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A0B0MKB0	0.0	A0A0B0MKB0_GOSAR; Homeobox-leucine zipper HAT22-like protein
STRING	Gorai.002G137300.1	1e-180	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-74	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]