PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_16998_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 304aa MW: 33204.4 Da PI: 7.3705

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_16998_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.4	5.8e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvhk+FGasnv kll++l++++reda++sl+yeAear+rdPvyG+vg+i+ l Cotton_A_16998_BGI-A2_v1.0 7 PCAACKFLRRKCTQECVFAPYFPPDNPQKFANVHKVFGASNVAKLLNELNTSQREDAVNSLAYEAEARLRDPVYGCVGLISIL 89 7******************************************************************************** PP DUF260 84 qqqleqlkaelallkee 100 q++l+q++++l+ +k+e Cotton_A_16998_BGI-A2_v1.0 90 QHKLKQMQHDLNNAKKE 106 **********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.087	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFANVH KVFGASNVAK LLNELNTSQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HKLKQMQHDL NNAKKELSTY IGPQAMLPIL 120 QPSVFLQQHV GNPSSSPSSS AVMQHNMMPM MGIPTAAAAA ASGQLMLREP QQQQIFEAQQ 180 QLAAVIAARE QQEMFRGYEQ HHGGQQPEIV RFNNGFEGSA SVTATGFNQI TTAAAVATMS 240 PSLALGSFEN PYQIQAQQDH HHCHGGHHPL QAQLLLQPQQ GQPPQQQQPQ RSGSEEARSI 300 GPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-50	4	124	8	129	LOB family transfactor Ramosa2.1
5ly0_B	1e-50	4	124	8	129	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648536.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	3e-94	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2P5Y6M6	1e-176	A0A2P5Y6M6_GOSBA; Uncharacterized protein
STRING	Gorai.011G104600.1	1e-167	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8008	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-93	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]