PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_16798_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 166aa MW: 18958.5 Da PI: 10.2616 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.2 | 1.2e-14 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r++t+ kR +g+ KK EL +LC++e++ ii++++ Cotton_A_16798_BGI-A2_v1.0 11 ITNDLARKTTYKKRTKGLVKKVPELTTLCGIEACAIIYAPD 51 89************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.755 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.0E-15 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-17 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.61E-18 | 3 | 51 | No hit | No description |
PRINTS | PR00404 | 1.6E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-13 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MSRKKIKLAY ITNDLARKTT YKKRTKGLVK KVPELTTLCG IEACAIIYAP DFDSQLEVVV 60 PRECMTLAVP SSRSCPVETK QLMVNQESFL EQSLAKATQH LRKLCKENRQ KELKTTMFQS 120 LKGKWILHSL NLIDLKELGL LVKQNLKEID NRVRVLTKAR CSSGCY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618068.1 | 1e-107 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0B0NSB9 | 7e-95 | A0A0B0NSB9_GOSAR; Uncharacterized protein | ||||
STRING | Gorai.013G168300.1 | 1e-69 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-38 | AGAMOUS-like 80 |