PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16646_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 213aa    MW: 24061.8 Da    PI: 9.9463
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16646_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.6e-183782147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                +g+W++eEd +l + v+++G+++W++I+r++  gR++k+c+ rw + 
  Cotton_A_16646_BGI-A2_v1.0 37 KGPWSAEEDRILTRFVEKYGPRNWSLISRYIK-GRSEKSCRRRWCNQ 82
                                79*****************************9.***********985 PP
2Myb_DNA-binding50.54.8e-1691133347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 ++++ Ede ++ a++++G++ W+tIar +  gRt++ +k++w++ 
  Cotton_A_16646_BGI-A2_v1.0  91 PFSQAEDETILAAHARFGNR-WATIARLLH-GRTDNAVKNHWNST 133
                                 79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0823287IPR017930Myb domain
SuperFamilySSF466891.16E-3035130IPR009057Homeodomain-like
SMARTSM007179.0E-173685IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-243890IPR009057Homeodomain-like
CDDcd001671.61E-143981No hitNo description
PfamPF139218.0E-184098No hitNo description
SMARTSM007173.1E-1388136IPR001005SANT/Myb domain
PROSITE profilePS5129419.3389138IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2291137IPR009057Homeodomain-like
CDDcd001674.50E-991134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEAVNGCSSS SSCDTSSSSS SKSSLSEMAS SKSEKIKGPW SAEEDRILTR FVEKYGPRNW  60
SLISRYIKGR SEKSCRRRWC NQLSPNVEHR PFSQAEDETI LAAHARFGNR WATIARLLHG  120
RTDNAVKNHW NSTLKRKAKE SRQQQQRKEQ ISMSTYQQMD EEALSTSLTL APPGSGTASV  180
AERRISVPAE LWDVMRDVVA REVREYMSST SSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-41341381105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591562e-46AJ459156.1 Gossypium hirsutum partial myb127 gene, clone pGhMYB127.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605743.11e-156PREDICTED: transcriptional activator Myb-like
TrEMBLA0A1U8PP061e-151A0A1U8PP06_GOSHI; transcriptional activator Myb-like
STRINGGorai.009G275100.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145531122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-56myb domain protein 73