PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_16456_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 391aa MW: 44709.9 Da PI: 6.7383 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.4 | 7.3e-27 | 82 | 163 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W ++e++ Li +rrem+ ++++k++k+lWe++s+km+e+gf rsp++C++kw+nl k++kk k+++++ s +++y+++ Cotton_A_16456_BGI-A2_v1.0 82 WVQDETRSLIGFRREMDGLFNTSKSNKHLWEQISAKMKEKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKE 161 ********************************************************************84...556899***9 PP trihelix 85 le 86 +e Cotton_A_16456_BGI-A2_v1.0 162 IE 163 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-4 | 72 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.293 | 74 | 138 | IPR017877 | Myb-like domain |
CDD | cd12203 | 5.18E-29 | 80 | 145 | No hit | No description |
Pfam | PF13837 | 7.7E-21 | 81 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MYLSEKPRPI DLYKEEGPAA APRDMIIEVT SNGDLPPHHH HHHPPPPHHH HQHQQQQQQM 60 ILGESSGEDP EVKAPKKRAE TWVQDETRSL IGFRREMDGL FNTSKSNKHL WEQISAKMKE 120 KGFDRSPTMC TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KNAYKSPTPP 180 PKPDSFMHFA DKGFEDAGIS FGPVEASGRP TLNLERRLDH DGHPLAITAA DAVAASGVPP 240 WNWRETPGNG GDCQSYGGRV ITVKYGDYTR RIGIDGTADA IREAIKSAFG LRSKRSFWLE 300 DEDNIVRSFD REMPLGNYTL HLDEGLAIKV CLYDESDHIP VHTEDKIFYT EDDYREYLAR 360 RGYTGLRDID GYRSIDNMDD LRPNAIYRGV S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 2e-51 | 76 | 161 | 1 | 86 | DNA binding protein GT-1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527209 | 1e-113 | HQ527209.1 Gossypium herbaceum clone NBRI_D_EYT27PB02D0J5N simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017607621.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A1U8I8P5 | 0.0 | A0A1U8I8P5_GOSHI; trihelix transcription factor GT-1-like | ||||
TrEMBL | A0A218KF86 | 0.0 | A0A218KF86_GOSHI; Trihelix transcription factor | ||||
STRING | Gorai.009G333800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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