PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16049_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 584aa    MW: 64404.6 Da    PI: 7.7808
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16049_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.41.5e-116996835
                        GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                 TplWR+gp  ++ LCnaCG ++r kg+
  Cotton_A_16049_BGI-A2_v1.0 69 GTPLWRNGPPEKPVLCNACGSRWRTKGT 96
                                4********88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.009566110IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-66899No hitNo description
Gene3DG3DSA:3.30.50.105.6E-86896IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.5E-96996IPR000679Zinc finger, GATA-type
CDDcd002023.40E-1070110No hitNo description
PfamPF139196.1E-8328416IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MGKQGPCYHC GVTTGRVPNN GRHCPFVCVL GGGFLLYSGK SQCALRGLVH RAGSASVGGD  60
MNWKTQRRGT PLWRNGPPEK PVLCNACGSR WRTKGTLAKY TPLHARAEPE DLRASRVKSI  120
SINKDREAKR KPNHDIAIVS PDYNLGFRKF VDEDTSNRSS SGSAISNSES CAQFGSADVS  180
DLTGPSQSNV WDSMVPSKKR TCVNRPKPSP VEKLTKDLCT ILHEQQSSYF SVSSNDDLLL  240
ESETPMVSVE IGHGGILIKH PSSIAREEES EASSLSFENK QYSMNEAYSH SSSFLAYNDS  300
KGVKYLGHGI EKAKNPAGQG MQHEQLKRDK AQHEKLLILE SRNLPLCNID LSDIINFEEF  360
VKHLTKDEQQ HLLQYLPPLD IAKLPESLKS MFESPQFEDN LCYFQQLLEE GVFNISVPGV  420
NAEDCKTLKR LALINLTKSH WVECHHGLKK CSSVGRSVIT RGPSVVPSNN SATVKRSRDG  480
QIPEARTLMS PKRVIMKATH ENKELRDNES SCFSPRSLFA LPPDGSSPVL DSLHFVDECS  540
DQDLLLDVPS NGSFPQAELL CPTSSFGQQA STSSNSPHPH LVHP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6092978e-76JX609297.1 Gossypium hirsutum clone NBRI_GE50488 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640832.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-135GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0B0MH260.0A0A0B0MH26_GOSAR; GATA transcription factor 26-like protein
STRINGGorai.003G177500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-135GATA transcription factor 26