PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15664_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 378aa    MW: 43351.4 Da    PI: 5.1804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15664_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.97.1e-3551453128
                         NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrkn 75 
                                 +GfrFhPtd e + e L +kv+ ++ ++ +       vi+++ di+k+eP +Lp  +++ ++++ wyfF++ + ky+++krkn
  Cotton_A_15664_BGI-A2_v1.0   5 KGFRFHPTDAEAI-ELLWEKVQLDRDSFVQlgdslvpVITQLnDICKFEPAELPgrSELVSGDNVWYFFCSPRYKYRNSKRKN 86 
                                 7************.99999999999444444556665899998***********5336677999******************* PP

                         NAM  76 ratksgyWkatgkdkevlsk..kgelvglkktLvfykg....rapkgektdWvmheyrl 128
                                 r+tk+gyW+ tgk ++++++  +++ +g+++ Lvfykg    +++k++kt W+mhe++l
  Cotton_A_15664_BGI-A2_v1.0  87 RVTKKGYWNPTGKFRTIVTTcdGKKITGTRQALVFYKGrvcvKNKKANKTLWIMHEFEL 145
                                 ******************99878888**********753333789999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.7533163IPR003441NAC domain
SuperFamilySSF1019419.68E-353163IPR003441NAC domain
PfamPF023651.5E-175145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNYVKGFRFH PTDAEAIELL WEKVQLDRDS FVQLGDSLVP VITQLNDICK FEPAELPGRS  60
ELVSGDNVWY FFCSPRYKYR NSKRKNRVTK KGYWNPTGKF RTIVTTCDGK KITGTRQALV  120
FYKGRVCVKN KKANKTLWIM HEFELTLNLP NQKSLILCKL KKKYGKVNVS IGEEEQSNQY  180
LPSSNLENHC TNNGIPKEQL NSTEQVAFNE NSGIQSELVN NEQTIDEFVD SLLIKNDEFY  240
SNQPYFVHDK QDPKNQEGFS DLTYQKLRTP NDRVWTMNEV GSSSALVAND PSYSDGDNNQ  300
HDTYFAEQGS ILAFENHVLV DSISMGGSGF DEFLHDGLFM AELSPLPKPP KNPDEVQNHQ  360
FSTNEQDEFW NSIFITTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-18114513140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628063.10.0PREDICTED: NAC domain-containing protein 4-like
TrEMBLA0A1U8LCE70.0A0A1U8LCE7_GOSHI; NAC domain-containing protein 4-like isoform X3
STRINGGorai.007G114400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2221145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.14e-25NAC domain containing protein 36