PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15595_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 274aa    MW: 30839.7 Da    PI: 5.9435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15595_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.4e-25127187259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +Dg++WrKYGqK++  s++prsY+rC+++   gC++ k+v+r ++d ++ +itY g+H+++
  Cotton_A_15595_BGI-A2_v1.0 127 EDGHAWRKYGQKNILHSKHPRSYFRCSHKhdqGCSAIKQVQRMEDDAQMYHITYIGTHTCR 187
                                 8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-25112187IPR003657WRKY domain
PROSITE profilePS5081119.497121184IPR003657WRKY domain
SuperFamilySSF1182901.7E-23123187IPR003657WRKY domain
SMARTSM007743.2E-35126188IPR003657WRKY domain
PfamPF031069.2E-25127187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFNFLKGVVG GSGGGFLVSL SRHLQGQQCA TELQVIVLHN NKPPQQAEEL VQKILWSFNQ  60
TLSMLAEAGH HDEVISQNQA TCNDDCKSQD SSESSKRSLS AFVKDKRGCY KRKRFAQTKI  120
VVSDKIEDGH AWRKYGQKNI LHSKHPRSYF RCSHKHDQGC SAIKQVQRME DDAQMYHITY  180
IGTHTCRDQY SSMATPRIDS PSPILKLESE EQATTPSDVT DLDSMTMWTD VMMGGVGFEI  240
DVVSNMYSCT EITCLDLEPV ELENGLLFDD TDFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-25121187369OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310910.0KF031091.1 Gossypium hirsutum WRKY transcription factor 46 (WRKY46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644436.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0B0PHP60.0A0A0B0PHP6_GOSAR; Putative WRKY transcription factor 70-like protein
STRINGGorai.010G219200.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-39WRKY DNA-binding protein 70