PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15356_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 446aa    MW: 50256.8 Da    PI: 7.9884
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15356_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.7e-11178213540
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                                 k  rr+++NReAAr+sR+RKka++++Le     L++
  Cotton_A_15356_BGI-A2_v1.0 178 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 213
                                 7789***********************985555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-8171220No hitNo description
SMARTSM003386.6E-10174241IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.266176220IPR004827Basic-leucine zipper domain
CDDcd147083.74E-22178230No hitNo description
SuperFamilySSF579592.46E-7178220No hitNo description
PfamPF001704.7E-8178216IPR004827Basic-leucine zipper domain
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
PfamPF141443.0E-30250322IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MATSRSNMNH SIQLDHHHHH QNQDHHQNHQ IPYAMMQSSS SSSIPANFVS KETGAYDLGE  60
LDQALFLYLD GQDPSTIQDQ RHHSSGIKPP TLNIFPSQPM HVEPPSSTKT STGLVSPSTS  120
GSKRPSEPSM ELANPRTDNI ASASAPNQPP KAVKREGNRK GPTTSSSEQE GPKTPDPKTL  180
RRLAQNREAA RKSRLRKKAY VQQLESSRIR LTQLEQELQR ARAQGMFFGG EAAMFDMEYG  240
RWVEEHHRLM CELRAAVQEH LPENELRVYV DNCLAHFDEV MNLKGMAAKT DVFHLVSGMW  300
KTPAERCFMW IAGFRPSHLI KIEPLTEQQI MGICALQQST QEAEEALSQG LEALNQSLSD  360
IITSDSLSCP PNMSNYMGQM AIAINKLSTL EGFVRQADNL RHQAIHRLHQ ILTIRQAARC  420
LLAIAEYFHR LRALSSLWLA RPRQEQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6189512e-72JX618951.1 Gossypium hirsutum clone NBRI_GE64622 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619937.10.0PREDICTED: transcription factor TGA2-like isoform X2
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1U8KVZ40.0A0A1U8KVZ4_GOSHI; transcription factor TGA2-like isoform X2
STRINGGorai.002G228200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72072843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-167bZIP family protein