PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15184_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 398aa    MW: 44981.5 Da    PI: 4.4447
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15184_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.61.5e-3751363128
                         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                 +GfrFhPtdeel+ + L      ++ +l +vi++v di+++ePw+L   +k++++++ wyf  +   +y+++kr nr+t++gy
  Cotton_A_15184_BGI-A2_v1.0   5 KGFRFHPTDEELIEYLLLVTFCVDRDSLVQVIDQVpDICQWEPWQLAesSKLQTGDRLWYFIYTPTYNYRNSKRINRTTREGY 87 
                                 7************999999988888899899***************7444899999*************************** PP

                         NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                 Wk tg+ +++++  +g+++g+kktLv+ykg  ++++  +t Wvmhey+l
  Cotton_A_15184_BGI-A2_v1.0  88 WKPTGNARKIIDPkTGKVIGTKKTLVYYKGqcNDKDKIRTCWVMHEYEL 136
                                 ***********9878899**********88445666779********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.8683158IPR003441NAC domain
SuperFamilySSF1019412.62E-374156IPR003441NAC domain
PfamPF023657.1E-205136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MNTVKGFRFH PTDEELIEYL LLVTFCVDRD SLVQVIDQVP DICQWEPWQL AESSKLQTGD  60
RLWYFIYTPT YNYRNSKRIN RTTREGYWKP TGNARKIIDP KTGKVIGTKK TLVYYKGQCN  120
DKDKIRTCWV MHEYELVAAP NSTDTDRKTF NLCKLKKRVD ISCTDAGQSS QHKDCDDVVH  180
NQSGIESYAG EISSQHNIAN DDVVSNLSSH DLDDAIPKGN LHERSKECNE PEGNSGVQKL  240
NSIIEKDDKS CSSVLTNGDE TITVERSDQN NVVVAVEGLG IPSSFEYLGD EEFFYNEGLS  300
FDELLEVPQA TNNSNWIQDQ SITNPDDVEF LNSIFVDNDE AYLLEENRPY PSAADNEVLG  360
AVGSSDSMEK PSKRLRLSHD DHVETTEARA GGSISYQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-22113613140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613837.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A2P5XCF90.0A0A2P5XCF9_GOSBA; Uncharacterized protein
STRINGGorai.001G231400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2220645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.22e-34TCV-interacting protein