PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14960_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 256aa    MW: 29628.9 Da    PI: 7.2491
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14960_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-161461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g WT+eEd +l  +v+++G  +W+  +++ g+ R++k+c++rw++yl
  Cotton_A_14960_BGI-A2_v1.0 14 KGTWTPEEDRKLTAYVTRYGCWNWRQLPKYAGLARCGKSCRLRWLNYL 61
                                799*****************99************************97 PP
2Myb_DNA-binding56.28.2e-1867112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+ ++eE+e +v++++ lG++ W++Ia+ ++ gRt++++k++w+++l
  Cotton_A_14960_BGI-A2_v1.0  67 RGNYSKEEEETIVRLHESLGNR-WSAIAAQLP-GRTDNEIKNHWHTHL 112
                                 899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.644961IPR017930Myb domain
SuperFamilySSF466891.37E-2811108IPR009057Homeodomain-like
SMARTSM007172.2E-91363IPR001005SANT/Myb domain
PfamPF002491.0E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-231568IPR009057Homeodomain-like
CDDcd001675.62E-91661No hitNo description
PROSITE profilePS5129425.04662116IPR017930Myb domain
SMARTSM007176.7E-1766114IPR001005SANT/Myb domain
PfamPF002494.1E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2669115IPR009057Homeodomain-like
CDDcd001673.46E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVRTPCSDKS GLRKGTWTPE EDRKLTAYVT RYGCWNWRQL PKYAGLARCG KSCRLRWLNY  60
LRPNIKRGNY SKEEEETIVR LHESLGNRWS AIAAQLPGRT DNEIKNHWHT HLKKRFMDKQ  120
NNSEKAVEKK EKKLNNHHHL VIDVPTSPPL ILESSLSASP QPTSSDQNST ITKDNTVISS  180
KDSVTYDHNN NNKTSFDGYE ANSGNFWNEP FFWDSCNINT SVTLDPASYE LPDFPFLDEE  240
ISCHFDSYDP LDGFYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016739176.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_017613904.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1U8NJI60.0A0A1U8NJI6_GOSHI; myb-related protein Myb4-like
STRINGGorai.012G132400.11e-176(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-61myb domain protein 14