PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14412_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 19435.4 Da PI: 5.2824 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.5 | 2.6e-39 | 16 | 114 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaC++lrr+C ++C+lapyfp +++ kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA ar+rdPvyG++g i +l Cotton_A_14412_BGI-A2_v1.0 16 PCAACRMLRRRCDSNCILAPYFPCDEMDKFAKVHKVFGASNVIKMIQMVEETNREDAVKALVYEATARMRDPVYGSTGAICQL 98 7********************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 q+ +++l+ +l+++k+ Cotton_A_14412_BGI-A2_v1.0 99 QKMVQELEMQLESTKA 114 ***********99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.567 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-39 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MGLESLIVTR PKTHQPCAAC RMLRRRCDSN CILAPYFPCD EMDKFAKVHK VFGASNVIKM 60 IQMVEETNRE DAVKALVYEA TARMRDPVYG STGAICQLQK MVQELEMQLE STKARVLELQ 120 QQKDQLWSVL TNVNHLELLS PINGGDNFCL GYDDSIAYDP DKFPVVGDWI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 9 | 117 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 9 | 117 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX581928 | 9e-73 | JX581928.1 Gossypium hirsutum clone NBRI_GE14664 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628331.1 | 1e-128 | PREDICTED: LOB domain-containing protein 25-like | ||||
Swissprot | Q9SK08 | 2e-40 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2P5YBG8 | 1e-126 | A0A2P5YBG8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G110000.1 | 1e-124 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18630 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-42 | LOB domain-containing protein 11 |