PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14006_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 322aa    MW: 35912.5 Da    PI: 9.6767
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14006_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.35.1e-19190223134
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Cotton_A_14006_BGI-A2_v1.0 190 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 223
                                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.04E-13183224No hitNo description
PROSITE profilePS5011412.954184220IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-18184235IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-15188224IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.44E-14189221No hitNo description
PfamPF003208.4E-17190223IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTPLYDLNSP PSPFPLEDLK HHHHHHLQLF LSLPQHTASS SSAHHPTFFS STDAAATHKP  60
QEPKPYDLKV NNYVSHDGGG GSSDIQQAIS SSSSLLESAA VDLSLSRKRK DDGDDYESVS  120
DRNNGSSVEL KWMSSKMRLT KKMMMNSNCS GPPPLPHNKA AVNDSKYQYP IQDSDEKYYF  180
SKTNNTIRVC SDCNTTTTPL WRSGPRGPKS LCNACGIRQR KARRALEAAA ENGETVAASM  240
KIRVHHNKKE IKKSRTVGQY KKELKSKSGN TCLHHHQKKR KLCFKEITLS LSKNSGLQRV  300
FPQDVEDAAI LLMELSCGLF HT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6152502e-99JX615250.1 Gossypium hirsutum clone NBRI_GE59146 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643056.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A1U8PJ810.0A0A1U8PJ81_GOSHI; GATA transcription factor 21-like
STRINGGorai.009G045000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16433713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.15e-28cytokinin-responsive gata factor 1