PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13920_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 399aa    MW: 43988.7 Da    PI: 8.1784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13920_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07236258123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 + C+ Cgk F+r  nL+ H+r H
  Cotton_A_13920_BGI-A2_v1.0 236 HYCQVCGKGFKRDANLRMHMRAH 258
                                 68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.34E-6234261No hitNo description
SMARTSM003550.0034236258IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-7236261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653236263IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-7294299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035577296329IPR015880Zinc finger, C2H2-like
SMARTSM0035540334356IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MISGSASCFP SASQGSPMYP LAEENMVPSS LEAGSGSGPD QSHSTTLLYN LSILKDKVHE  60
AQSLVSILIS PDQAHPESTS LAVSSMGSLV QDIIVTASSM IFICQQMSLG TASGNNINTE  120
LHQQYVRVIP DNRISQPPNF SDICVGNIVQ EKGQSFYSSA ETISWYGDTC NNGRNNTNGN  180
NRNRSLQVSN DDKLERKEFV EFPRRSEISG GCEAVPAMNY DIIELDAEDL LAKYTHYCQV  240
CGKGFKRDAN LRMHMRAHGD EYKSSAALIN PMKNPREGSS SSSALGNCST KMNKKYSCPQ  300
EGCRWNQKHA KFQPLKSMIC VKNHYKRSHC PKMYVCKRCN CKQFSVLSDL RTHEKHCGDL  360
KWQCSCGTTF SRKDKLMGHV ALFVGHTPAL ATNPMANPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606078.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A2P5VVV70.0A0A2P5VVV7_GOSBA; Uncharacterized protein
STRINGGorai.009G090000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-113C2H2 family protein