PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_13737_BGI-A2_v1.0 | ||||||||
Common Name | F383_08080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 486aa MW: 50595.8 Da PI: 9.3367 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.4e-05 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cotton_A_13737_BGI-A2_v1.0 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.8 | 4e-05 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Cotton_A_13737_BGI-A2_v1.0 136 WKCERCSKKYAVQSDWKAHMKTC 158 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 59 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.18E-7 | 59 | 82 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 7.7E-5 | 60 | 82 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 101 | 131 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.2E-5 | 124 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.18E-7 | 131 | 157 | No hit | No description |
SMART | SM00355 | 77 | 136 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MTVSTASGEA TASSLGNQIQ DNQLTGGGPP KKKRNLPGMP DPDAEVIALS PKTLLATNRF 60 VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTSKEIRKRV YVCPEPSCVH HNPARALGDL 120 TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTI FSRRDSFITH 180 RAFCDALAEE SVRTQTIGVA NPEGNINVNG NGSGNTTMVG GGAAATLPPP QPLTPSTTSV 240 VSPGLSIQSS EVPENPMGLS PAAATTATTN VFASIFAPNS QPSKISAPSS FLQATTPLER 300 TSLSLSSPLY LSNNGSSIFT GPENDHCHYA PSPQPAMSAT ALLQKAAQMG AAASNPSLLR 360 GLGLAVSSAS PAGQDPNVKS ESNTATASLG LGFPSNGSSG LTNPIIGSSS LFGNKPTTLD 420 LLGLGMADSG ASSSGLSALL TSFGGGFNVG AATATSYGAG GSNNSPRETW EGGAERKPNG 480 PANAML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-35 | 132 | 201 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 5e-35 | 132 | 201 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646460.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 1e-142 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A0B0PUR9 | 0.0 | A0A0B0PUR9_GOSAR; Zinc finger MAGPIE-like protein | ||||
STRING | Gorai.009G203800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-118 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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