PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13622_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 234aa    MW: 26827.3 Da    PI: 8.187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13622_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17134184255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr ++ +g+++AeIrdp  ng  +r++lg++ ta eAa a+++a+ k++g
  Cotton_A_13622_BGI-A2_v1.0 134 HYRGVRKRP-WGKFAAEIRDPARNG--ARVWLGTYETAMEAALAYDRAAYKMRG 184
                                 7********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-30133193IPR001471AP2/ERF domain
PfamPF008472.0E-12134184IPR001471AP2/ERF domain
PROSITE profilePS5103223.723134192IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22134193IPR016177DNA-binding domain
SMARTSM003801.2E-34134198IPR001471AP2/ERF domain
CDDcd000183.90E-29134192No hitNo description
PRINTSPR003676.0E-10135146IPR001471AP2/ERF domain
PRINTSPR003676.0E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKVLSTCELI FSCNHENPGT ISSAFTCLKS CLTEHWGDLP LKVDDSQDMI IYDSLNQALN  60
YGWSPVPPHY STVTTAVKSE PQIMMMTPFM EPNPSELTTQ PIDAAAARNC FYLEKQENKW  120
FRNYENEKVE KGRHYRGVRK RPWGKFAAEI RDPARNGARV WLGTYETAME AALAYDRAAY  180
KMRGYRALLN FPQLIGNNEP EPVRTTPKRG REDDESAWYN SSSPKRKRSS LESI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-34131199270ATERF1
3gcc_A7e-34131199270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721173.11e-178PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_017636446.11e-178PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404791e-65ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A1U8M6751e-176A0A1U8M675_GOSHI; ethylene-responsive transcription factor 2-like
TrEMBLA0A2P5XIA11e-176A0A2P5XIA1_GOSBA; Uncharacterized protein
STRINGGorai.008G213900.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2825633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-53ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]