PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13446_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 482aa    MW: 54019.2 Da    PI: 4.5648
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13446_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34511422102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+++++ed +l+ +isw  +g+sfvv+d+ ef+k +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++
  Cotton_A_13446_BGI-A2_v1.0  51 FLSKTFDLVEDTSLDPIISWGPTGESFVVWDPVEFSKFILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANE 124
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  F++gk+ ll++i+r+ks
  Cotton_A_13446_BGI-A2_v1.0 125 AFQRGKRYLLKNIQRRKS 142
                                 ****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3346140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-5647140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3648140IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-185174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3051140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434090114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-18102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MNPDEEKRSQ NALPNPPQTS PFSSSLMELE TFSCGVPQPL EILQGNPVPP FLSKTFDLVE  60
DTSLDPIISW GPTGESFVVW DPVEFSKFIL PRNFKHNNFS SFVRQLNTYG FRKIDTDKWE  120
FANEAFQRGK RYLLKNIQRR KSPQSQQFGN YFGSSTEAGR SGVEGEIERL RKEKSMLMQE  180
VVELQQEQQG TARHVEVVNQ RLQSAEQRQK QMVSFLAKLF QNPAFLARLR QKKEQGEISS  240
SRMRRKFVKH QLVELIDSET PAEGQIVKYS KLDWRDIAIS PSAPDIIPTS VEQSPDYLPK  300
GVAETDLGSE GFPFPVDDEV VVSDELATAH GFLGTPELVG EGSSGTGIQD LKGKNVIGSE  360
QVVNPGYFIS SPEDLVKQKS TPYFSSPISE SVSKQDVWSM DFDATVGMPS SRNELWGNLE  420
TYDIPELGVT GELSDVWDLG FLQAAEDSGA DKWPTEGYPF DNPHTENQGG QSEANRSKKM  480
DP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-234814017120Heat shock factor protein 1
5d5u_B1e-234814026129Heat shock factor protein 1
5d5v_B1e-234814026129Heat shock factor protein 1
5d5v_D1e-234814026129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226234ARLRQKKEQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486200.0KJ748620.1 Gossypium hirsutum HSF17 (HSF17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609890.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A1U8HR920.0A0A1U8HR92_GOSHI; heat stress transcription factor A-3-like
STRINGGorai.006G158000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109502529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-106heat shock transcription factor A3