PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_13320_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21484.3 Da PI: 5.6634 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.5 | 2.4e-43 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +l Cotton_A_13320_BGI-A2_v1.0 35 PCAACKILRRRCADKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPESQRADAVSSIVYEASARIRDPVYGCAGAICQL 117 7********************************************************************************** PP DUF260 84 qqqleqlkaelallkee 100 q+q+++l+a+la++++e Cotton_A_13320_BGI-A2_v1.0 118 QKQVNELQAQLAKAQAE 134 *************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.172 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-43 | 35 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEYTSEVAAQ SPSPKSSNSS SSPPPPPPTS VVISPCAACK ILRRRCADKC VLAPYFPPTE 60 PTKFTIAHRV FGASNIIKFL QELPESQRAD AVSSIVYEAS ARIRDPVYGC AGAICQLQKQ 120 VNELQAQLAK AQAEVVNMQL QQANLVALLC MEVAQSPQQN PHQPIDDFLS NSPQSYHSNP 180 SFLDDNNLGS SWEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-42 | 27 | 137 | 3 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-42 | 27 | 137 | 3 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615895 | 1e-112 | JX615895.1 Gossypium hirsutum clone NBRI_GE60161 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645902.1 | 1e-143 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 9e-74 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-73 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A1U8NXZ4 | 1e-122 | A0A1U8NXZ4_GOSHI; LOB domain-containing protein 1-like | ||||
STRING | Gorai.001G129700.1 | 1e-121 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 9e-65 | LOB domain-containing protein 11 |