PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12127_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 163aa    MW: 18010.3 Da    PI: 8.3257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12127_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-201868155
                         AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++ a+  l+g
  Cotton_A_12127_BGI-A2_v1.0 18 PKYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEKAARAYDTAAMTLRG 68
                                79********.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.34E-311875No hitNo description
PfamPF008475.4E-141868IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-311976IPR001471AP2/ERF domain
SMARTSM003808.8E-361982IPR001471AP2/ERF domain
PROSITE profilePS5103223.4331976IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-221977IPR016177DNA-binding domain
PRINTSPR003676.9E-112031IPR001471AP2/ERF domain
PRINTSPR003676.9E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MRRGRGPAAA VVPDGEEPKY RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD SAEKAARAYD  60
TAAMTLRGPK AKTNFSINPS TTTAFPINHQ HRRLYPMETS SSSETAGVAR GFHSDCDSSS  120
PVVIDDGDMA SSSCKQNQTL MPLDLNFPPL DEVDDLYCTA LCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-21475571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5552881e-120KF555288.1 Gossypium barbadense ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016685020.16e-83PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE43e-33ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A1U8J3U71e-81A0A1U8J3U7_GOSHI; ethylene-responsive transcription factor 3-like
STRINGGorai.009G443400.13e-75(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-35ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]