PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_12042_BGI-A2_v1.0 | ||||||||
Common Name | F383_32361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 551aa MW: 61107.7 Da PI: 8.5898 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.3e-17 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Cotton_A_12042_BGI-A2_v1.0 59 KGGWTPEEDETLRNAVATFKGKSWKKIAESFP-DRSEVQCLHRWQKVL 105 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.7 | 1.5e-19 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l Cotton_A_12042_BGI-A2_v1.0 111 KGPWTQEEDDKIVELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.5 | 1.1e-16 | 163 | 206 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Cotton_A_12042_BGI-A2_v1.0 163 KDAWTLEEELALMNAHRVYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.478 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.09E-15 | 55 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-16 | 59 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 61 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-12 | 62 | 105 | No hit | No description |
PROSITE profile | PS51294 | 32.538 | 106 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-32 | 108 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-18 | 110 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-18 | 111 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-15 | 113 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 114 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 161 | 212 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-15 | 162 | 210 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.191 | 162 | 212 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.4E-15 | 163 | 206 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.67E-12 | 165 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MTELKIEERC LENKQLTTAS SSSVSEGGGS AIVKSPAISS PAPTSPNHRR TTGPIRRAKG 60 GWTPEEDETL RNAVATFKGK SWKKIAESFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIVELVSKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRV 180 YGNKWAEIAK VLPGRTDNAI KNHWNSSMKK KLDFYLATGK LPPVVKIVLK NETKDIETPA 240 ATKNLLVYSK KESDSTAQTS SGTIDICKPE EDGKDQLESS TPVQDMAASS SIIPSESVET 300 ESAELKPQSF DANPCSCNSV TVVKFESRRT SSAIVEDKVV ETQLRSDTPT YGPLCYEPPR 360 LQGGTLLDSD NLNKKGMQHE WTSTPITSPV SFFTPPCVKG SGFGTQSPES ILRIAAKTFP 420 NTPSIFRKRK TSPNKIGKPN EETTKNRVQL SGEQERTENS REQAQFRDGS SCESPAFQGN 480 SSIGPNCTAF NASPPYRLRS KRTAVFKSVE RQLEFAFDKE RHEDSMKSSN LLVNGSSSIE 540 DCLHATKMEV T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-70 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-70 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017608525.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Swissprot | Q6R032 | 1e-172 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A0B0MV06 | 0.0 | A0A0B0MV06_GOSAR; Myb-related 3R-1-like protein | ||||
STRING | Gorai.006G172800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1667 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-162 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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