PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11969_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 314aa MW: 34434.4 Da PI: 9.022

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11969_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k F++ L H r H Cotton_A_11969_BGI-A2_v1.0 60 HVCPVCSKGFTSGKALGGHVRIH 82 79***************999998 PP
2	zf-C2H2	15	7.2e-05	135	156	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k F++ +L H+r+H Cotton_A_11969_BGI-A2_v1.0 135 SCCICKKDFKSLKSLFGHMRNH 156 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.41E-7	60	82	No hit	No description
PROSITE profile	PS50157	9.993	60	87	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.3E-8	60	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.023	60	82	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.5E-4	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.41E-7	129	156	No hit	No description
SMART	SM00355	0.21	134	156	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	136	156	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.2E-6	136	158	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDDQVTNTME KGSVSIETSD SVPLKPNNNK LMVKLKISKK SYGGSGGGGG GGGGDGGGQH 60 VCPVCSKGFT SGKALGGHVR IHMKANKNGG RYKKISKRQP RNNNNNNIRK KIPIMAAVAA 120 AETPHESHGS EEKVSCCICK KDFKSLKSLF GHMRNHPERN WRGIRPPPSD KNSCCSSVSE 180 NDEAVVVDQI KGSASDLLKS LPKWTTTTKR FEKSTRSDHA NNADADTDTD TEDEITEAAY 240 CLMKLSRGNS FELDNTKIHK TPLKTSFYTK NPKTTPLKEE AKQYYTKNNK TQQLDFDLNE 300 PYIGEDSDDS DSEV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615723	1e-165	JX615723.1 Gossypium hirsutum clone NBRI_GE59867 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017624954.1	0.0	PREDICTED: uncharacterized protein LOC108468582
TrEMBL	A0A1U8NG98	0.0	A0A1U8NG98_GOSHI; uncharacterized protein LOC107948087
STRING	Gorai.004G014300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11455	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	1e-21	C2H2 family protein