PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11454_BGI-A2_v1.0
Common NameF383_13213
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 200aa    MW: 22280.8 Da    PI: 8.0991
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11454_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-19555155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + g
  Cotton_A_11454_BGI-A2_v1.0  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAILMSG 55
                                59*******9.**********8.....334*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-33563No hitNo description
PfamPF008472.8E-12653IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-20665IPR016177DNA-binding domain
SMARTSM003806.2E-39669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-33665IPR001471AP2/ERF domain
PROSITE profilePS5103221.944663IPR001471AP2/ERF domain
PRINTSPR003671.2E-10718IPR001471AP2/ERF domain
PRINTSPR003671.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDQAA ILMSGRNAKT  60
NFPRSQTANG DPEGNESSHS SSPPNELSEL LHAKLRKCSK APSPSMTCLR LDTENSHIGV  120
WQKRAGKTSD SNWVMTVQFG KGNAQVSAKG SNTQEPSSSS EVRGEMDEEE RIALQMIEEL  180
LQRNCSSSFG VAEEEGNLFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16263163ATERF1
3gcc_A1e-16263163ATERF1
5wx9_A3e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750028.11e-147PREDICTED: ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_016750029.11e-147PREDICTED: ethylene-responsive transcription factor WIN1-like isoform X2
RefseqXP_017605534.11e-147PREDICTED: ethylene-responsive transcription factor WIN1-like isoform X1
RefseqXP_017605535.11e-147PREDICTED: ethylene-responsive transcription factor WIN1-like isoform X2
RefseqXP_017605536.11e-147PREDICTED: ethylene-responsive transcription factor WIN1-like isoform X2
SwissprotQ9XI331e-75WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0B0PVJ71e-146A0A0B0PVJ7_GOSAR; Ethylene-responsive transcription factor WIN1-like protein
TrEMBLA0A1U8PI951e-146A0A1U8PI95_GOSHI; ethylene-responsive transcription factor WIN1-like isoform X1
TrEMBLA0A1U8PII71e-146A0A1U8PII7_GOSHI; ethylene-responsive transcription factor WIN1-like isoform X2
STRINGGorai.009G017500.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-67ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]