PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_11365_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 153aa MW: 18126.5 Da PI: 9.4448 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.7 | 9.2e-57 | 5 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPtd+elv +yL+kkv+++k++l +vi+++d+y++ePwdL++ ++e+kewyfFs++dkky+tg+r+nrat + Cotton_A_11365_BGI-A2_v1.0 5 VPPGFRFHPTDDELVGYYLRKKVASQKIDL-DVITDIDLYRIEPWDLQErcrIGYEEQKEWYFFSHKDKKYPTGTRTNRATMA 86 69****************************.9***************953432234677************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+Wkatg+dk+v+++k++l+g++ktLvfykgrap+g+ktdW+mheyrle Cotton_A_11365_BGI-A2_v1.0 87 GFWKATGRDKAVYDNKSKLIGMRKTLVFYKGRAPNGHKTDWIMHEYRLE 135 ***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-57 | 3 | 141 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.192 | 5 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-29 | 6 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence Send to blast |
MESSVPPGFR FHPTDDELVG YYLRKKVASQ KIDLDVITDI DLYRIEPWDL QERCRIGYEE 60 QKEWYFFSHK DKKYPTGTRT NRATMAGFWK ATGRDKAVYD NKSKLIGMRK TLVFYKGRAP 120 NGHKTDWIMH EYRLESDDNR PPQASTHIIT IFN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-51 | 2 | 134 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC847220 | 0.0 | KC847220.1 Gossypium hirsutum NAC domain protein NAC43 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314424.1 | 1e-110 | NAC domain-containing protein 37-like | ||||
Swissprot | Q9SL41 | 2e-94 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A2P5XXU5 | 1e-111 | A0A2P5XXU5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G063600.1 | 1e-103 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6950 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-96 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|