PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11307_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 278aa    MW: 31126.7 Da    PI: 8.8681
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11307_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.68.4e-3314107194
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 aCaaCk++rrkC+++Cv+ap fpa ++++f+ vhk+FG++n++ +l+   ++er++a++sl +eA a+++dPv+G +g++++l
  Cotton_A_11307_BGI-A2_v1.0  14 ACAACKHQRRKCESNCVFAPFFPAGRAESFREVHKIFGVKNMTGILTPRTPDERKKAVESLEWEALAWTQDPVRGPLGLFRRL 96 
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkael 94 
                                 +++l++l+  l
  Cotton_A_11307_BGI-A2_v1.0  97 EEELQHLNDLL 107
                                 ****9988655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.31913114IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-3114108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSNGEEAAPN TRHACAACKH QRRKCESNCV FAPFFPAGRA ESFREVHKIF GVKNMTGILT  60
PRTPDERKKA VESLEWEALA WTQDPVRGPL GLFRRLEEEL QHLNDLLDQL VEPYQQNQIN  120
SAGLNGFNHN SATGRVIVPN SNINATYIGY GSNPNLEIDV PPINNYDGVP PISADGLNEN  180
QLVVNNYFPG YYGIPDRLTV FRESGGVGNV GQTSTPSPTL PPKQETMPQR NQIWGPSSRR  240
PLTNNHFPLR NHRRGSQQRY QYGFLQRPAS QSQGRGLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-2271081105LOB family transfactor Ramosa2.1
5ly0_B9e-2271081105LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730798.10.0PREDICTED: LOB domain-containing protein 6-like
RefseqXP_017604215.10.0PREDICTED: LOB domain-containing protein 6-like
TrEMBLA0A1U8MZ090.0A0A1U8MZ09_GOSHI; LOB domain-containing protein 6-like
STRINGGorai.009G165600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1960367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-26LOB domain-containing protein 2