PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11203_BGI-A2_v1.0
Common NameF383_07505
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 239aa    MW: 27037.1 Da    PI: 7.9483
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11203_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.47.1e-3351105358
                 ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                 k rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e
  Cotton_A_11203_BGI-A2_v1.0  51 KPRYRECLKNHAVGIGGHALDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKESE 105
                                 779*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.7E-3053104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.9E-3053103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2353105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.57654103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.8E-32163238IPR009057Homeodomain-like
SuperFamilySSF466899.57E-20164237IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-26176232IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEFEDQEEQE EEMGLTPSYD SLGNSSRLKM SGVEPGSVTP TGQQQQQQQR KPRYRECLKN  60
HAVGIGGHAL DGCGEFMPAG TEGTLDALKC AACNCHRNFH RKESELGSPN SVHTTDLYFH  120
HHHHHQPPQF APYFRAPTGY LHVAGQQRPL ALPSTSGGGG HSREDQEDAS NQGSSRKRFR  180
TKFTQEQKEK MLSLAERLGW RIQKHDEEIV QQFCNETGVK RQVLKVWMHN NKHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-281772341875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619763.11e-178PREDICTED: zinc-finger homeodomain protein 2-like isoform X1
SwissprotA2Z2593e-79ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH53e-79ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0B0PB581e-177A0A0B0PB58_GOSAR; Uncharacterized protein
STRINGGorai.003G042700.11e-158(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-74homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]