PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11191_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 316aa    MW: 35713.3 Da    PI: 4.6149
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11191_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-1958111356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Cotton_A_11191_BGI-A2_v1.0  58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                                 566899***********************************************9 PP
2HD-ZIP_I/II129.21.7e-4157149193
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++y++lk++ e+L+++
  Cotton_A_11191_BGI-A2_v1.0  57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKTSYETLKANYEALQHD 139
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelke 93 
                                 +e+L +e++e
  Cotton_A_11191_BGI-A2_v1.0 140 NEALLKEIRE 149
                                 ****999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-1942115IPR009057Homeodomain-like
PROSITE profilePS5007117.34653113IPR001356Homeobox domain
SMARTSM003891.1E-1756117IPR001356Homeobox domain
PfamPF000463.5E-1658111IPR001356Homeobox domain
CDDcd000869.30E-1758114No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2060119IPR009057Homeodomain-like
PRINTSPR000318.9E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000318.9E-693109IPR000047Helix-turn-helix motif
PfamPF021831.6E-15113153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKRSLGSSDS LGALMSICPT TDEHSPRNNH VYSREFQSML DGLDEEGCLE ESGHVAEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
LLKTSYETLK ANYEALQHDN EALLKEIREL QAKQSGESTE TESNVSVKEE VIISENTDNK  180
TLEQSEPAAD LNYGSVVVGA TLFPDMKDGS SDSDSSAILN EDIIINTKTN KDNSPNNAAF  240
SSSGVLELDS QHHLLISSSS SPTSSMDCFN FTKTSYQPHQ YVKMEEHNFF TADEACNFFS  300
DEQAPSLHWY SPEQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270860.0HQ527086.1 Gossypium herbaceum clone NBRI_D2_391 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016742365.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
RefseqXP_017623341.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
SwissprotP466689e-76ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLA0A1U8NU450.0A0A1U8NU45_GOSHI; homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A2P5YVM70.0A0A2P5YVM7_GOSBA; Uncharacterized protein
STRINGGorai.003G041500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.16e-75homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]