PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_10835_BGI-A2_v1.0 | ||||||||
Common Name | F383_08039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 287aa MW: 31588.7 Da PI: 9.0046 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 141 | 195 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Cotton_A_10835_BGI-A2_v1.0 141 RKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTK 195 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.9 | 7.8e-40 | 141 | 230 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk+rl+k+q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke Cotton_A_10835_BGI-A2_v1.0 141 RKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTNENRRLQKE 223 69********************************************************************************* PP HD-ZIP_I/II 84 veeLreel 91 +eLr +l Cotton_A_10835_BGI-A2_v1.0 224 LQELR-SL 230 ****9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.248 | 137 | 197 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-15 | 139 | 201 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.82E-18 | 139 | 205 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 141 | 195 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.4E-16 | 141 | 195 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.94E-17 | 141 | 198 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 172 | 195 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.2E-21 | 197 | 241 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 8.0E-11 | 197 | 231 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGLDDACNTG LVLGLGFSST PETPSKADNQ KPKKSTAKVA PVTSFEPFLT LGLSGDSYGV 60 TVAKKVDVNN KGGGYLHHRH EDSPPTAAAG DLYRPGSPPS AVSSFSSGRV KRERDHSCEE 120 VEVEKNSCRV SDEDEDGVNA RKKLRLTKQQ SALLEESFKQ HSTLNPNQKQ ALARQLNLKP 180 RQVEVWFQNR RARTKLKQTE VDCEFLKRCC ETLTNENRRL QKELQELRSL KTAAQPFCMN 240 MPAATLTMCP SCERIGGVAG DGDSKNPFSM PSKPRFYKPV TNPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 197 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636249.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 5e-98 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A0B0PLD6 | 0.0 | A0A0B0PLD6_GOSAR; Homeobox-leucine zipper HAT22-like protein | ||||
STRING | Gorai.007G057100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-100 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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