PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_10567_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 137aa MW: 15338.1 Da PI: 9.5451 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 97.7 | 1.7e-30 | 10 | 124 | 98 | 214 |
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 qaI+e v+++++vHiiD++i+ G+QW L+qaL sR e p l++T+v+ + k+ ++ tg+ L +fA++lg+pf+f+ Cotton_A_10567_BGI-A2_v1.0 10 GIQAIVEHVSKAKKVHIIDLGIKTGVQWTVLMQALVSRYECPIeILKVTAVAT---NGKRLIKGTGKWLLSFAQSLGLPFSFK 89 569***********************************9766549********...579999********************* PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrll 214 v+v++++ dl+ + ++v+ gE++aV + l ++l Cotton_A_10567_BGI-A2_v1.0 90 VVVVSDMLDLKENLFEVDVGETVAVYAATTLRSML 124 ****************************9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.823 | 1 | 137 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-28 | 10 | 124 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MPWRNIPFVG IQAIVEHVSK AKKVHIIDLG IKTGVQWTVL MQALVSRYEC PIEILKVTAV 60 ATNGKRLIKG TGKWLLSFAQ SLGLPFSFKV VVVSDMLDLK ENLFEVDVGE TVAVYAATTL 120 RSMLVMPNQF RTYNEND |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022761269.1 | 6e-56 | DELLA protein RGL1-like | ||||
TrEMBL | A0A0D2QH25 | 6e-71 | A0A0D2QH25_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G258800.1 | 1e-71 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-18 | GRAS family protein |