PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10093_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 408aa    MW: 43813 Da    PI: 6.7252
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10093_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20192241255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Cotton_A_10093_BGI-A2_v1.0 192 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 241
                                 7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.2E-33192250IPR001471AP2/ERF domain
PfamPF008473.5E-14192241IPR001471AP2/ERF domain
PROSITE profilePS5103225.712192249IPR001471AP2/ERF domain
SMARTSM003803.0E-37192255IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22192250IPR016177DNA-binding domain
PRINTSPR003671.1E-11193204IPR001471AP2/ERF domain
CDDcd000182.41E-15200251No hitNo description
PRINTSPR003671.1E-11215231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MCLLNKVAHQ RGSGEYVRFP PAGDGGTEEQ QDGYSHQIQS QQNQPMMMLQ HGNRAQATQM  60
SGLTHGVSGQ RASAYGANLA GMAPSSFGYS GSASAASPSP SASPSGSGSG SGFGSGLWIG  120
QKRGREEEVT AQFIESLPRV QRNFAGFRGS IADSSSGATM VAEEAASTVA PPTTSTETSA  180
AAYEETAELR RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAEAAAR AYDEAALRFR  240
GNRAKLNFPE NVRLVPQQMQ NFPGTQTSVS SSLTTHFSAS DSTSMPTYYD SQPLQSSTND  300
MLRDYWQYSQ LLQNSGDLHG QQATSLVDQM IQYSQFANIQ QPMVSSSFPS LPASFAASGS  360
SSSSSSASFP LLFAEHQQMS IFRQPSDRTP ASESDFPVPP WSCPSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22191252163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153201e-131JX615320.1 Gossypium hirsutum clone NBRI_GE59244 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644035.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A2P5YAB90.0A0A2P5YAB9_GOSBA; Uncharacterized protein
STRINGGorai.010G131500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-24ethylene response factor 110