PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09305_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 326aa    MW: 34028.4 Da    PI: 6.0913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09305_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10176220554
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Cotton_A_09305_BGI-A2_v1.0 176 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 220
                                 99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.42E-16169231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-16173233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-11175225No hitNo description
PfamPF000101.2E-7176220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAGNQQQEAG LGDDFFEQIL AVPPGYGGGG GGGATLPMGL QLGSSGGATG ASGGDSGGGG  60
FRGIGMMPLG LNLEHGFLRH EDGVVVDNNN NNASCSAASA VSGISERDSM HMVSLFPPFG  120
QMQTQQIRAS PPPQPPPQLH QPFHSQPTSG PVAAAPHPPA VRPRVRARRG QATDPHSIAE  180
RLRRERIAER MKALQELVPS CNKTDRAAML DEIVDYVKFL RLQVKVLSMS RLGAAGAVAQ  240
LVADVPLLSV EGDGAGGGTQ PAWEKWSNDG TEQQVAKLME EDIGAAMQFL QSKALCIVPI  300
SLASAIFPAH QPDAPTIVKP ESNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5251961e-104HQ525196.1 Gossypium herbaceum clone NBRI_D2_1401 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627357.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-84UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D2SS581e-168A0A0D2SS58_GOSRA; Uncharacterized protein
STRINGGorai.007G277200.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]