PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_09177_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 336aa MW: 36979.8 Da PI: 7.451 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.1e-08 | 77 | 101 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f + GtC+y ++C+FaH+ Cotton_A_09177_BGI-A2_v1.0 77 FKTKLCCKFKA-GTCPYISNCNFAHS 101 69*********.*************8 PP | |||||||
2 | zf-CCCH | 41.9 | 1.7e-13 | 219 | 244 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Cotton_A_09177_BGI-A2_v1.0 219 WKTRICNKWELTGYCPFGNKCHFAHG 244 8************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 9.1E-8 | 74 | 107 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-14 | 74 | 109 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.31 | 76 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 76 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-6 | 77 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-9 | 148 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 149 | 178 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.022 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-17 | 214 | 248 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-10 | 215 | 249 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-9 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-11 | 219 | 244 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MDYSRENVVH VIPTNDNWVP NSSDPSVWAT EEDYRVWNNQ ETSTDTLLSN SDQAPNKKPR 60 NSQDLNTRSR AIGKMFFKTK LCCKFKAGTC PYISNCNFAH STEELRRPPP NWQEIVAAHE 120 EEKGILSEPR EEFQIPSLGS TSFSGETQRS YKGRHCKKFY SEEGCPYGDN CTFLHDEQSK 180 NRESVAISLG PGGYGGGGAG GGGNGGGGGN GSNAKPSNWK TRICNKWELT GYCPFGNKCH 240 FAHGAAELHR YRGGLGDAET KDTNATLPDS KQGGGMPLRT PSDPAAASVP QLPVSDVYHS 300 QRTSIVLQRP GQRTLQKWKG PDKISLIYGD WIDDIQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX590702 | 1e-118 | JX590702.1 Gossypium hirsutum clone NBRI_GE25674 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017620443.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q9LQM3 | 1e-121 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A2P5X9C3 | 0.0 | A0A2P5X9C3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G032800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-125 | C3H family protein |