PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08848_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 333aa    MW: 38827.4 Da    PI: 8.3958
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08848_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.27.7e-2278175186
                    trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 
                                 +Wt q+v++Li+a+ +++e+ ++++            k ++W+ vsk m +rg+++sp+qC++k+++lnkryk++++  +k+ 
  Cotton_A_08848_BGI-A2_v1.0  78 KWTVQMVKLLINAVCYIDEDASSDCqggvkrkpsmsHKIGKWRCVSKLMVKRGYRVSPQQCEDKFNDLNKRYKRLNDVLGKGt 160
                                 7*********************9977778888888899********************************************6 PP

                    trihelix  72 tsessstcpyfdqle 86 
                                 +++++++  ++d ++
  Cotton_A_08848_BGI-A2_v1.0 161 SCKVVEKPELLDVMD 175
                                 699999998888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1876195No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEGNPVLDDN LIQGDGSFQV HEGLNPQFYQ FQDVMKEIGK SCDDNWNTFD EEGGGGGCDG  60
CYGGGCKGKG EFLWRRVKWT VQMVKLLINA VCYIDEDASS DCQGGVKRKP SMSHKIGKWR  120
CVSKLMVKRG YRVSPQQCED KFNDLNKRYK RLNDVLGKGT SCKVVEKPEL LDVMDVSDKV  180
KEEVKKILSS KNLFYKEMCL YHTRNRLYLP QYPKLQCSLQ LRQYNGDDEF EKELHDAEPD  240
DVFRQGNDVS LNGMEYGKSS AYGLQEQWMA FRLLELQKQK LQIQVQKLEL EKKRFKWRRT  300
NWNQDKDLDK MRLENDCMKL ANERLAFKLV TRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6143991e-171JX614399.1 Gossypium hirsutum clone NBRI_GE57745 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613026.10.0PREDICTED: uncharacterized protein LOC108458225
TrEMBLA0A1U8L7R00.0A0A1U8L7R0_GOSHI; uncharacterized protein LOC107924623
STRINGGorai.012G159500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2820933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.15e-54