PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08801_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 458aa MW: 52430.2 Da PI: 7.8175

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08801_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	283.4	6.6e-87	84	456	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 l++ Ll +A+ v++ +++ a + L +l ++s gd++qR++a+f+ +L ar++ s y+ + ++++ ++++ a++ Cotton_A_08801_BGI-A2_v1.0 84 LIHSLLIIATSVDKYNMNSALENLIQLYPTVSLMGDSVQRVVAHFADGLFARILTPKSPFYDMVMKEPST----EQQFLAFTS 162 6899*************************************************999999988777776....677788899 PP GRAS 84 fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160 ++ vsP+++f+h+taNq I ea+e++ +++H+iDf++s+G+QWp+L+q+L++ +++ slR+Tg g+ s eel+e Cotton_A_08801_BGI-A2_v1.0 163 LYRVSPYYQFAHFTANQVIIEAFEKDqetnnnRALHVIDFNVSYGFQWPSLIQSLSQ-SGKRVSLRLTGYGR----SLEELQE 240 *******************998667776788****************98.78899*****....9** PP GRAS 161 tgerLakfAee.lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 t+ rL +fA+ +++ fef+ l ++ ++l +++ r k++E++aVnlv++l +++ ++ +++Lk v sl+P +v++v Cotton_A_08801_BGI-A2_v1.0 241 TEARLVSFAKGfCNLVFEFQGL-LRSSSKLIINQ-REKKNETVAVNLVFHLSNFM----EM----SKTLKSVHSLKPSIVILV 313 *****97369***6.66666664555.7899***********9....44....459*********** PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325 eqe + +Fl rf+e+l+y++a+fdsl+ lp+es er ++Er lg+ei+ ++ e+ + +e++++W++++e+ GF+ Cotton_A_08801_BGI-A2_v1.0 314 EQEGNPRVRNFLSRFMESLHYFAAMFDSLDDCLPQESTERLSIERNHLGKEIKAMINSENLD----EENKGTWKNMIERHGFG 392 *********************************************************9....8999********* PP GRAS 326 pvplsekaakqaklllrkvks.......dg......yrve.eesgslv.lgWkdrpLvsvSaWr 374 ++ls+k qaklll+ +g +rv ++g ++ lgW+dr L+++SaW+ Cotton_A_08801_BGI-A2_v1.0 393 GMKLSSKCLIQAKLLLKVRTHnycplpcEGeninggFRVFqRDEGKALsLGWQDRCLLTASAWQ 456 ************865530111111221111125554333555555************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.627	58	421	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-84	84	456	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MVMEDRDEEE EHLNLSLAIV TDPNGENSRK RKRKLLNVCN PLNPSLEGYF EGKIFKLLQV 60 REEMLKLDHK RSKGLAENGK GLHLIHSLLI IATSVDKYNM NSALENLIQL YPTVSLMGDS 120 VQRVVAHFAD GLFARILTPK SPFYDMVMKE PSTEQQFLAF TSLYRVSPYY QFAHFTANQV 180 IIEAFEKDQE TNNNRALHVI DFNVSYGFQW PSLIQSLSQS GKRVSLRLTG YGRSLEELQE 240 TEARLVSFAK GFCNLVFEFQ GLLRSSSKLI INQREKKNET VAVNLVFHLS NFMEMSKTLK 300 SVHSLKPSIV ILVEQEGNPR VRNFLSRFME SLHYFAAMFD SLDDCLPQES TERLSIERNH 360 LGKEIKAMIN SENLDEENKG TWKNMIERHG FGGMKLSSKC LIQAKLLLKV RTHNYCPLPC 420 EGENINGGFR VFQRDEGKAL SLGWQDRCLL TASAWQCV

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MVMEDRDEEE EHLNLSLAIV TDPNGENSRK RKRKLLNVCN PLNPSLEGYF EGKIFKLLQV  60
REEMLKLDHK RSKGLAENGK GLHLIHSLLI IATSVDKYNM NSALENLIQL YPTVSLMGDS  120
VQRVVAHFAD GLFARILTPK SPFYDMVMKE PSTEQQFLAF TSLYRVSPYY QFAHFTANQV  180
IIEAFEKDQE TNNNRALHVI DFNVSYGFQW PSLIQSLSQS GKRVSLRLTG YGRSLEELQE  240
TEARLVSFAK GFCNLVFEFQ GLLRSSSKLI INQREKKNET VAVNLVFHLS NFMEMSKTLK  300
SVHSLKPSIV ILVEQEGNPR VRNFLSRFME SLHYFAAMFD SLDDCLPQES TERLSIERNH  360
LGKEIKAMIN SENLDEENKG TWKNMIERHG FGGMKLSSKC LIQAKLLLKV RTHNYCPLPC  420
EGENINGGFR VFQRDEGKAL SLGWQDRCLL TASAWQCV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-49	92	455	27	378	Protein SCARECROW
5b3h_A	1e-49	92	455	26	377	Protein SCARECROW
5b3h_D	1e-49	92	455	26	377	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	RKRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633320.1	0.0	PREDICTED: scarecrow-like protein 23
TrEMBL	A0A1U8NZ71	0.0	A0A1U8NZ71_GOSHI; scarecrow-like protein 23
TrEMBL	A0A2P5XYH8	0.0	A0A2P5XYH8_GOSBA; Uncharacterized protein
STRING	Gorai.005G075100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15761	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-51	RGA-like 2