PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08380_BGI-A2_v1.0
Common NameF383_10882
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 298aa    MW: 33747 Da    PI: 6.4548
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08380_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-072472821954
                                 HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  19 FeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 F  +  +++e++++LA+++gL+ +q+ +WF N+R +
  Cotton_A_08380_BGI-A2_v1.0 247 FSDQVLLQEEDKARLAQETGLQLKQINNWFINQRKR 282
                                 77888899**************************87 PP
2ELK30.86.4e-11195216122
                         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                 ELKh+L+++Y+++++++++E++
  Cotton_A_08380_BGI-A2_v1.0 195 ELKHELKQGYKEKIVDVREEIL 216
                                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-173175IPR005540KNOX1
PfamPF037901.8E-163373IPR005540KNOX1
SMARTSM012561.4E-2182138IPR005541KNOX2
PfamPF037912.4E-1490137IPR005541KNOX2
SMARTSM011888.9E-4195216IPR005539ELK domain
PROSITE profilePS512139.83195215IPR005539ELK domain
PfamPF037893.7E-7195216IPR005539ELK domain
SuperFamilySSF466898.55E-13217288IPR009057Homeodomain-like
SMARTSM003892.5E-6217290IPR001356Homeobox domain
CDDcd000861.42E-10218286No hitNo description
Gene3DG3DSA:1.10.10.601.0E-23222287IPR009057Homeodomain-like
PfamPF059203.6E-12235282IPR008422Homeobox KN domain
PROSITE profilePS5007110.042247286IPR001356Homeobox domain
PROSITE patternPS000270261284IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAFDGFVSHH SEHMQTLAFN QPSSPPNFDP AKCKAEIIGH PMYPQLLEGH VACLRVATPV  60
DQLPKIDAQL ARSQYVSAKY SSSPTAGAAH HELDHFMANY VLLLGFFKDQ LQQHVRVHAM  120
EAVMSCWDLE QSLQSLTGVS PGEGTGATMS DDEDEVVDND HGLFDGSFDG IDSMGFGPLV  180
PSETERSLME HVRQELKHEL KQGYKEKIVD VREEILRKRR AGKLPGDTTS ILKAWWQSHS  240
KWPYPTFSDQ VLLQEEDKAR LAQETGLQLK QINNWFINQR KRNWHNTPST SLKSKREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775561e-135JX577556.1 Gossypium hirsutum clone NBRI_GE9405 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632073.10.0PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_017633444.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480011e-144KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A0B0N9X70.0A0A0B0N9X7_GOSAR; Homeobox protein knotted-1-like 4
STRINGGorai.010G056100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-147KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]